Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_035640.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06021-IBu 0 0.49 1.13 -8.68 -8.68
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_035640.1 0 0.66 2.47 -3.45 -3.92

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035640.1 SmLINC00372-IBu 0.92 7.38e-07 4.14e-05
Smp_035640.1 SmLINC01316-IBu 0.82 1.00e-04 2.10e-03
Smp_035640.1 SmLINC02026-IBu 0.90 4.32e-06 1.00e-04
Smp_035640.1 SmLINC04430-IBu 0.91 1.88e-06 8.06e-05
Smp_035640.1 SmLINC04947-IBu 0.84 8.31e-05 1.20e-03
Smp_035640.1 SmLINC05559-IBu 0.90 3.32e-06 1.00e-04
Smp_035640.1 SmLINC06021-IBu 0.80 2.00e-04 2.70e-03
Smp_035640.1 SmLINC06490-IBu 0.88 1.18e-05 3.00e-04
Smp_035640.1 SmLINC06700-IBu 0.80 2.00e-04 3.00e-03
Smp_035640.1 SmLINC06836-IBu 0.89 8.57e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_035640.1 0 0.66 2.47 -3.45 -3.92
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_105420.2 0 0.72 -0.11 -12.04 -12.04
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_205060.1 0 0.36 1.28 -6.63 -10.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 Smp_035640.1 0.94 1.74e-07 1.58e-05
Smp_090930.5 Smp_035640.1 0.94 1.68e-07 1.54e-05
Smp_098890.1 Smp_035640.1 0.95 3.09e-08 4.88e-06
Smp_035640.1 Smp_105420.2 0.90 2.67e-06 1.00e-04
Smp_138080.1 Smp_035640.1 0.93 2.74e-07 2.16e-05
Smp_159070.3 Smp_035640.1 0.93 3.56e-07 2.60e-05
Smp_194060.1 Smp_035640.1 0.96 2.31e-09 8.73e-07
Smp_200120.1 Smp_035640.1 0.92 5.25e-07 3.40e-05
Smp_205060.1 Smp_035640.1 0.91 2.44e-06 1.00e-04