Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_035430.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_035430.1 0 -1.46 -0.39 4.55 1.33

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035430.1 SmLINC00477-IBu 0.87 1.72e-05 3.00e-04
Smp_035430.1 SmLINC00484-IBu 0.90 3.20e-06 1.00e-04
Smp_035430.1 SmLINC01433-IBu 0.87 1.55e-05 3.00e-04
Smp_035430.1 SmLINC01822-IBu 0.90 3.30e-06 1.00e-04
Smp_035430.1 SmLINC03542-IBu 0.91 1.92e-06 8.18e-05
Smp_035430.1 SmLINC03693-IBu 0.80 3.00e-04 3.30e-03
Smp_035430.1 SmLINC04054-IBu 0.83 1.00e-04 1.50e-03
Smp_035430.1 SmLINC04345-IBu 0.80 3.00e-04 3.20e-03
Smp_035430.1 SmLINC04521-IBu 0.80 2.00e-04 2.70e-03
Smp_035430.1 SmLINC04663-IBu 0.82 1.00e-04 1.70e-03
Smp_035430.1 SmLINC04747-IBu 0.80 2.00e-04 3.00e-03
Smp_035430.1 SmLINC04759-IBu 0.89 6.14e-06 1.00e-04
Smp_035430.1 SmLINC04769-IBu 0.89 6.43e-06 1.00e-04
Smp_035430.1 SmLINC05009-IBu 0.81 1.00e-04 2.20e-03
Smp_035430.1 SmLINC05171-IBu 0.83 1.00e-04 1.60e-03
Smp_035430.1 SmLINC06007-IBu 0.84 6.67e-05 1.00e-03
Smp_035430.1 SmLINC06221-IBu 0.82 1.00e-04 1.70e-03
Smp_035430.1 SmLINC06449-IBu 0.81 2.00e-04 2.70e-03
Smp_035430.1 SmLINC06538-IBu 0.95 2.64e-08 4.13e-06
Smp_035430.1 SmLINC06543-IBu 0.82 1.00e-04 2.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_035430.1 0 -1.46 -0.39 4.55 1.33
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194980.1 0 2.89 8.17 12.59 10.55

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035430.1 Smp_005470.1 0.94 8.47e-08 9.66e-06
Smp_035430.1 Smp_081920.1 0.93 2.22e-07 1.87e-05
Smp_035430.1 Smp_105730.1 0.90 2.51e-06 1.00e-04
Smp_035430.1 Smp_131840.1 0.90 3.22e-06 1.00e-04
Smp_035430.1 Smp_154180.1 0.90 4.69e-06 1.00e-04
Smp_035430.1 Smp_172520.1 0.94 1.77e-07 1.60e-05
Smp_035430.1 Smp_194970.1 0.90 2.73e-06 1.00e-04
Smp_194980.1 Smp_035430.1 0.92 7.89e-07 4.51e-05