Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_035270.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
Smp_035270.1 0 -9.88 -14.08 -13.91 -7.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035270.1 SmLINC02039-IBu 0.93 4.48e-07 2.91e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC05670-IBu 0 -3.35 -5.02 -2.57 -4.14
Smp_015980.1 0 -2.53 -5.79 -2.18 -1.48
Smp_016200.1 0 -3.14 -11.01 -6.75 -11.01
Smp_035270.1 0 -9.88 -14.08 -13.91 -7.32
Smp_037020.1 0 -2.12 -8.24 -8.43 -8.13
Smp_044280.2 0 -10.78 -4.06 -10.78 -10.78
Smp_059930.1 0 -3.75 -7.72 -3.31 -3.23
Smp_119730.1 0 -2.59 -2.93 -5.18 -4.91
Smp_148800.1 0 -3.26 -5.77 -5.61 -4.70
Smp_154300.1 0 -4.18 -5.59 -3.13 -4.15
Smp_205970.1 0 -3.84 -6.54 -6.54 -6.54

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035270.1 SmLINC02039-IBu 0.93 4.48e-07 3.04e-05
Smp_035270.1 SmLINC05670-IBu 0.94 8.70e-08 9.84e-06
Smp_035270.1 Smp_015980.1 0.91 1.86e-06 8.29e-05
Smp_016200.1 Smp_035270.1 0.91 1.60e-06 7.43e-05
Smp_035270.1 Smp_037020.1 0.91 2.32e-06 9.68e-05
Smp_035270.1 Smp_044280.2 0.98 6.48e-12 2.10e-08
Smp_035270.1 Smp_059930.1 0.92 7.48e-07 4.35e-05
Smp_035270.1 Smp_119730.1 0.92 6.89e-07 4.10e-05
Smp_148800.1 Smp_035270.1 0.91 2.02e-06 8.77e-05
Smp_035270.1 Smp_154300.1 0.90 2.82e-06 1.00e-04
Smp_205970.1 Smp_035270.1 0.95 3.77e-08 5.58e-06