Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_035260.1 Data

Correlation between Smp_035260.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_035260.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC05870-IBu 0 0.25 4.65 5.77 4.71
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_035260.1 0 0.25 4.25 5.82 4.32

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035260.1 SmLINC00477-IBu 0.90 3.78e-06 1.00e-04
Smp_035260.1 SmLINC00484-IBu 0.93 3.49e-07 2.44e-05
Smp_035260.1 SmLINC00769-IBu 0.83 1.00e-04 1.40e-03
Smp_035260.1 SmLINC01066-IBu 0.83 1.00e-04 1.50e-03
Smp_035260.1 SmLINC01139-IBu 0.84 7.17e-05 1.10e-03
Smp_035260.1 SmLINC01433-IBu 0.85 4.86e-05 8.00e-04
Smp_035260.1 SmLINC01435-IBu 0.86 3.35e-05 6.00e-04
Smp_035260.1 SmLINC01538-IBu 0.83 9.86e-05 1.40e-03
Smp_035260.1 SmLINC01569-IBu 0.80 3.00e-04 3.30e-03
Smp_035260.1 SmLINC01733-IBu 0.80 2.00e-04 2.90e-03
Smp_035260.1 SmLINC01746-IBu 0.84 6.24e-05 1.00e-03
Smp_035260.1 SmLINC01822-IBu 0.87 2.35e-05 4.00e-04
Smp_035260.1 SmLINC03309-IBu 0.86 2.87e-05 5.00e-04
Smp_035260.1 SmLINC03542-IBu 0.89 5.91e-06 1.00e-04
Smp_035260.1 SmLINC03693-IBu 0.85 4.56e-05 7.00e-04
Smp_035260.1 SmLINC04054-IBu 0.90 4.21e-06 1.00e-04
Smp_035260.1 SmLINC04345-IBu 0.90 4.26e-06 1.00e-04
Smp_035260.1 SmLINC04432-IBu 0.81 1.00e-04 2.20e-03
Smp_035260.1 SmLINC04475-IBu 0.90 3.22e-06 1.00e-04
Smp_035260.1 SmLINC04521-IBu 0.80 3.00e-04 3.30e-03
Smp_035260.1 SmLINC04663-IBu 0.88 1.24e-05 3.00e-04
Smp_035260.1 SmLINC04747-IBu 0.90 4.12e-06 1.00e-04
Smp_035260.1 SmLINC04759-IBu 0.81 2.00e-04 2.70e-03
Smp_035260.1 SmLINC04769-IBu 0.95 2.98e-08 4.48e-06
Smp_035260.1 SmLINC05009-IBu 0.86 3.52e-05 6.00e-04
Smp_035260.1 SmLINC05171-IBu 0.88 1.14e-05 2.00e-04
Smp_035260.1 SmLINC05632-IBu 0.86 3.65e-05 6.00e-04
Smp_035260.1 SmLINC05870-IBu 0.89 5.24e-06 1.00e-04
Smp_035260.1 SmLINC06007-IBu 0.85 5.19e-05 8.00e-04
Smp_035260.1 SmLINC06010-IBu 0.85 4.60e-05 8.00e-04
Smp_035260.1 SmLINC06221-IBu 0.90 4.48e-06 1.00e-04
Smp_035260.1 SmLINC06418-IBu 0.82 1.00e-04 1.90e-03
Smp_035260.1 SmLINC06444-IBu 0.86 2.81e-05 5.00e-04
Smp_035260.1 SmLINC06449-IBu 0.90 4.62e-06 1.00e-04
Smp_035260.1 SmLINC06536-IBu 0.83 1.00e-04 1.40e-03
Smp_035260.1 SmLINC06537-IBu 0.82 1.00e-04 1.70e-03
Smp_035260.1 SmLINC06538-IBu 0.83 9.94e-05 1.40e-03
Smp_035260.1 SmLINC06543-IBu 0.87 2.13e-05 4.00e-04

Correlation between Smp_035260.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_035260.1 0 0.25 4.25 5.82 4.32
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_129110.1 0 7.10 10.62 11.56 10.18
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_197400.1 0 0.00 0.00 10.12 7.45

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 Smp_035260.1 0.92 5.52e-07 3.52e-05
Smp_014780.1 Smp_035260.1 0.93 2.75e-07 2.17e-05
Smp_035260.1 Smp_045200.1 0.93 4.39e-07 3.00e-05
Smp_058140.3 Smp_035260.1 0.90 2.97e-06 1.00e-04
Smp_035260.1 Smp_084270.1 0.90 4.79e-06 1.00e-04
Smp_105730.1 Smp_035260.1 0.91 1.50e-06 7.10e-05
Smp_118560.1 Smp_035260.1 0.94 1.05e-07 1.11e-05
Smp_035260.1 Smp_125200.1 0.93 3.76e-07 2.69e-05
Smp_129110.1 Smp_035260.1 0.91 1.71e-06 7.81e-05
Smp_131840.1 Smp_035260.1 0.91 1.35e-06 6.62e-05
Smp_035260.1 Smp_134960.1 0.91 2.13e-06 9.11e-05
Smp_154180.1 Smp_035260.1 0.91 1.64e-06 7.57e-05
Smp_160360.1 Smp_035260.1 0.90 3.92e-06 1.00e-04
Smp_163940.1 Smp_035260.1 0.93 2.74e-07 2.16e-05
Smp_172520.1 Smp_035260.1 0.93 3.56e-07 2.59e-05
Smp_035260.1 Smp_175020.1 0.94 1.74e-07 1.58e-05
Smp_194960.1 Smp_035260.1 0.90 3.32e-06 1.00e-04
Smp_035260.1 Smp_194970.1 0.91 1.38e-06 6.69e-05
Smp_194980.1 Smp_035260.1 0.94 1.39e-07 1.36e-05
Smp_197400.1 Smp_035260.1 0.91 1.40e-06 6.78e-05