Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_035200.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035200.3 SmLINC00037-IBu 0.91 2.14e-06 8.83e-05
Smp_035200.3 SmLINC00133-IBu 0.90 4.05e-06 1.00e-04
Smp_035200.3 SmLINC00282-IBu 0.90 3.31e-06 1.00e-04
Smp_035200.3 SmLINC00294-IBu 0.82 1.00e-04 1.90e-03
Smp_035200.3 SmLINC00784-IBu 0.88 1.19e-05 3.00e-04
Smp_035200.3 SmLINC01462-IBu 0.83 9.45e-05 1.30e-03
Smp_035200.3 SmLINC01486-IBu 0.90 2.96e-06 1.00e-04
Smp_035200.3 SmLINC01637-IBu 0.91 2.26e-06 9.17e-05
Smp_035200.3 SmLINC02255-IBu 0.83 1.00e-04 1.50e-03
Smp_035200.3 SmLINC02630-IBu 0.86 2.51e-05 5.00e-04
Smp_035200.3 SmLINC03056-IBu 0.85 4.20e-05 7.00e-04
Smp_035200.3 SmLINC03362-IBu 0.81 2.00e-04 2.50e-03
Smp_035200.3 SmLINC03848-IBu 0.94 1.70e-07 1.48e-05
Smp_035200.3 SmLINC03930-IBu 0.91 1.95e-06 8.26e-05
Smp_035200.3 SmLINC04075-IBu 0.82 1.00e-04 1.80e-03
Smp_035200.3 SmLINC04106-IBu 0.80 3.00e-04 3.20e-03
Smp_035200.3 SmLINC04366-IBu 0.94 1.66e-07 1.45e-05
Smp_035200.3 SmLINC05284-IBu 0.88 1.27e-05 3.00e-04
Smp_035200.3 SmLINC05716-IBu 0.90 3.01e-06 1.00e-04
Smp_035200.3 SmLINC05720-IBu 0.89 6.22e-06 1.00e-04
Smp_035200.3 SmLINC06210-IBu 0.82 1.00e-04 1.90e-03
Smp_035200.3 SmLINC06535-IBu 0.90 3.34e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00311-IBu 0 -0.38 -1.64 -13.37 -13.37
SmLINC00367-IBu 0 -0.32 -2.33 -6.04 -11.31
SmLINC00466-IBu 0 -0.03 -2.49 -5.09 -7.41
SmLINC00514-IBu 0 0.52 -8.42 -4.05 -6.11
SmLINC00619-IBu 0 -0.13 -1.79 -4.72 -5.91
SmLINC00957-IBu 0 -0.21 -1.59 -8.70 -10.64
SmLINC01088-IBu 0 0.12 -2.15 -3.73 -3.81
SmLINC01341-IBu 0 -0.38 -2.69 -3.98 -4.09
SmLINC01362-IBu 0 0.33 -1.08 -3.83 -4.89
SmLINC01459-IBu 0 0.54 -1.00 -3.24 -4.18
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC01703-IBu 0 0.45 -1.31 -4.28 -4.91
SmLINC01705-IBu 0 0.21 -2.02 -4.88 -6.15
SmLINC01725-IBu 0 1.14 -1.23 -3.05 -5.30
SmLINC01888-IBu 0 0.19 -1.52 -3.63 -4.69
SmLINC02042-IBu 0 -0.18 -2.36 -6.62 -7.23
SmLINC02317-IBu 0 -0.23 -5.11 -7.32 -7.30
SmLINC02334-IBu 0 0.29 -1.21 -3.45 -5.81
SmLINC02355-IBu 0 -0.56 -2.14 -5.15 -7.24
SmLINC02737-IBu 0 -0.51 -1.91 -5.38 -6.61
SmLINC02921-IBu 0 0.04 -2.01 -6.94 -10.26
SmLINC03129-IBu 0 0.38 -1.94 -3.38 -3.83
SmLINC03565-IBu 0 0.98 -1.34 -4.00 -5.34
SmLINC03663-IBu 0 0.69 -1.37 -3.57 -4.79
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03897-IBu 0 0.23 -1.59 -3.45 -4.44
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC03994-IBu 0 0.17 -2.19 -4.62 -5.34
SmLINC04108-IBu 0 -0.24 -0.89 -7.24 -4.10
SmLINC04149-IBu 0 -0.04 -2.24 -7.53 -8.23
SmLINC04166-IBu 0 -0.32 -5.44 -5.44 -5.07
SmLINC04214-IBu 0 -0.71 -1.81 -4.24 -4.23
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC04439-IBu 0 -0.04 -2.12 -5.68 -6.38
SmLINC04598-IBu 0 -0.68 -2.61 -7.38 -7.35
SmLINC04606-IBu 0 -0.48 -2.83 -5.66 -8.00
SmLINC05307-IBu 0 -0.24 -3.06 -4.14 -6.23
SmLINC05572-IBu 0 0.06 -1.32 -4.02 -9.37
SmLINC05586-IBu 0 0.17 -1.90 -6.28 -7.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05749-IBu 0 0.17 -1.59 -4.81 -5.79
SmLINC05956-IBu 0 0.14 -1.45 -3.73 -4.48
SmLINC06106-IBu 0 0.00 -1.21 -3.43 -4.79
SmLINC06111-IBu 0 -0.47 -2.79 -12.47 -8.65
SmLINC06257-IBu 0 -0.36 -2.04 -6.75 -8.37
SmLINC06336-IBu 0 0.18 -1.19 -3.28 -4.48
SmLINC06367-IBu 0 -0.17 -2.22 -3.46 -5.10
SmLINC06383-IBu 0 0.40 -1.51 -4.06 -6.48
SmLINC06424-IBu 0 0.67 -0.98 -3.65 -4.75
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06563-IBu 0 -0.01 -1.84 -6.93 -6.95
SmLINC06610-IBu 0 -0.00 -1.33 -3.85 -4.79
SmLINC06852-IBu 0 -0.66 -1.67 -3.89 -4.94
Smp_006960.1 0 -0.14 -0.92 -3.26 -5.09
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_038560.4 0 -0.50 -2.81 -6.82 -6.68
Smp_061590.2 0 0.20 -1.67 -5.35 -5.03
Smp_074610.1 0 -0.17 -3.08 -8.53 -6.22
Smp_082240.1 0 -0.22 -3.45 -3.39 -3.32
Smp_095460.1 0 -0.21 -2.74 -7.08 -8.45
Smp_100600.1 0 -0.51 -2.27 -6.43 -6.43
Smp_108390.1 0 -0.09 -2.06 -5.55 -4.63
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_123100.1 0 1.03 -1.57 -3.15 -3.94
Smp_128900.1 0 -0.43 -1.87 -6.58 -7.65
Smp_131830.1 0 1.24 0.03 -5.02 -4.76
Smp_136600.1 0 0.07 -2.48 -5.77 -7.33
Smp_143870.1 0 -0.39 -1.89 -6.40 -8.68
Smp_165510.1 0 0.09 -3.88 -8.04 -8.63
Smp_182030.1 0 -0.35 -4.07 -9.56 -9.56
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
Smp_184400.1 0 0.15 -4.14 -8.88 -8.88
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_185080.1 0 -0.58 -3.13 -5.88 -3.60
Smp_185370.1 0 -0.81 -2.32 -9.88 -9.93
Smp_185440.1 0 -0.12 -1.84 -5.54 -6.28
Smp_185560.1 0 0.07 -2.33 -8.32 -8.32
Smp_199850.1 0 -0.54 -1.71 -4.55 -4.12
Smp_200970.1 0 0.13 -1.19 -4.97 -7.63
Smp_202490.1 0 0.07 -2.34 -9.58 -9.58
Smp_205280.1 0 0.75 0.23 -4.69 -4.81
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_205460.1 0 0.98 -3.11 -8.72 -8.72

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035200.3 SmLINC00037-IBu 0.91 2.14e-06 9.14e-05
Smp_035200.3 SmLINC00133-IBu 0.90 4.05e-06 1.00e-04
Smp_035200.3 SmLINC00282-IBu 0.90 3.31e-06 1.00e-04
Smp_035200.3 SmLINC00311-IBu 0.90 3.09e-06 1.00e-04
Smp_035200.3 SmLINC00367-IBu 0.91 1.40e-06 6.77e-05
Smp_035200.3 SmLINC00466-IBu 0.93 2.47e-07 2.01e-05
Smp_035200.3 SmLINC00514-IBu 0.91 1.99e-06 8.67e-05
Smp_035200.3 SmLINC00619-IBu 0.91 1.43e-06 6.89e-05
Smp_035200.3 SmLINC00957-IBu 0.92 6.65e-07 4.01e-05
Smp_035200.3 SmLINC01088-IBu 0.91 1.73e-06 7.87e-05
Smp_035200.3 SmLINC01341-IBu 0.93 3.94e-07 2.78e-05
Smp_035200.3 SmLINC01362-IBu 0.91 1.67e-06 7.68e-05
Smp_035200.3 SmLINC01459-IBu 0.91 1.54e-06 7.26e-05
Smp_035200.3 SmLINC01486-IBu 0.90 2.96e-06 1.00e-04
Smp_035200.3 SmLINC01637-IBu 0.91 2.26e-06 9.49e-05
Smp_035200.3 SmLINC01703-IBu 0.90 2.61e-06 1.00e-04
Smp_035200.3 SmLINC01705-IBu 0.91 1.36e-06 6.65e-05
Smp_035200.3 SmLINC01725-IBu 0.90 3.63e-06 1.00e-04
Smp_035200.3 SmLINC01888-IBu 0.91 2.05e-06 8.86e-05
Smp_035200.3 SmLINC02042-IBu 0.92 9.95e-07 5.31e-05
Smp_035200.3 SmLINC02317-IBu 0.91 2.27e-06 9.51e-05
Smp_035200.3 SmLINC02334-IBu 0.91 1.29e-06 6.40e-05
Smp_035200.3 SmLINC02355-IBu 0.93 4.77e-07 3.18e-05
Smp_035200.3 SmLINC02737-IBu 0.91 1.72e-06 7.82e-05
Smp_035200.3 SmLINC02921-IBu 0.90 3.64e-06 1.00e-04
Smp_035200.3 SmLINC03129-IBu 0.92 1.03e-06 5.48e-05
Smp_035200.3 SmLINC03565-IBu 0.92 8.99e-07 4.95e-05
Smp_035200.3 SmLINC03663-IBu 0.92 1.18e-06 5.99e-05
Smp_035200.3 SmLINC03848-IBu 0.94 1.70e-07 1.56e-05
Smp_035200.3 SmLINC03897-IBu 0.94 9.79e-08 1.06e-05
Smp_035200.3 SmLINC03930-IBu 0.91 1.95e-06 8.56e-05
Smp_035200.3 SmLINC03994-IBu 0.90 4.22e-06 1.00e-04
Smp_035200.3 SmLINC04108-IBu 0.91 1.21e-06 6.13e-05
Smp_035200.3 SmLINC04149-IBu 0.92 8.70e-07 4.84e-05
Smp_035200.3 SmLINC04166-IBu 0.92 8.15e-07 4.62e-05
Smp_035200.3 SmLINC04214-IBu 0.91 1.43e-06 6.88e-05
Smp_035200.3 SmLINC04366-IBu 0.94 1.66e-07 1.53e-05
Smp_035200.3 SmLINC04439-IBu 0.94 1.38e-07 1.35e-05
Smp_035200.3 SmLINC04598-IBu 0.90 4.34e-06 1.00e-04
Smp_035200.3 SmLINC04606-IBu 0.93 3.53e-07 2.58e-05
Smp_035200.3 SmLINC05307-IBu 0.92 8.88e-07 4.91e-05
Smp_035200.3 SmLINC05572-IBu 0.93 3.04e-07 2.33e-05
Smp_035200.3 SmLINC05586-IBu 0.92 1.18e-06 6.00e-05
Smp_035200.3 SmLINC05716-IBu 0.90 3.01e-06 1.00e-04
Smp_035200.3 SmLINC05749-IBu 0.90 4.55e-06 1.00e-04
Smp_035200.3 SmLINC05956-IBu 0.92 7.93e-07 4.53e-05
Smp_035200.3 SmLINC06106-IBu 0.90 3.15e-06 1.00e-04
Smp_035200.3 SmLINC06111-IBu 0.92 1.17e-06 5.98e-05
Smp_035200.3 SmLINC06257-IBu 0.94 7.49e-08 8.88e-06
Smp_035200.3 SmLINC06336-IBu 0.90 2.60e-06 1.00e-04
Smp_035200.3 SmLINC06367-IBu 0.92 7.16e-07 4.22e-05
Smp_035200.3 SmLINC06383-IBu 0.90 3.57e-06 1.00e-04
Smp_035200.3 SmLINC06424-IBu 0.90 2.87e-06 1.00e-04
Smp_035200.3 SmLINC06535-IBu 0.90 3.34e-06 1.00e-04
Smp_035200.3 SmLINC06563-IBu 0.95 1.93e-08 3.55e-06
Smp_035200.3 SmLINC06610-IBu 0.92 9.71e-07 5.22e-05
Smp_035200.3 SmLINC06852-IBu 0.92 9.46e-07 5.13e-05
Smp_006960.1 Smp_035200.3 0.90 4.18e-06 1.00e-04
Smp_032970.1 Smp_035200.3 0.92 1.18e-06 6.02e-05
Smp_036270.4 Smp_035200.3 0.92 8.11e-07 4.60e-05
Smp_038560.4 Smp_035200.3 0.93 4.95e-07 3.26e-05
Smp_061590.2 Smp_035200.3 0.95 3.14e-08 4.92e-06
Smp_074610.1 Smp_035200.3 0.95 5.47e-08 7.17e-06
Smp_082240.1 Smp_035200.3 0.91 2.07e-06 8.91e-05
Smp_095460.1 Smp_035200.3 0.92 9.81e-07 5.26e-05
Smp_100600.1 Smp_035200.3 0.90 4.67e-06 1.00e-04
Smp_108390.1 Smp_035200.3 0.95 2.10e-08 3.76e-06
Smp_111640.1 Smp_035200.3 0.95 5.93e-08 7.58e-06
Smp_123100.1 Smp_035200.3 0.91 1.64e-06 7.58e-05
Smp_128900.1 Smp_035200.3 0.91 1.48e-06 7.06e-05
Smp_131830.1 Smp_035200.3 0.91 2.28e-06 9.55e-05
Smp_136600.1 Smp_035200.3 0.94 1.82e-07 1.63e-05
Smp_143870.1 Smp_035200.3 0.91 1.66e-06 7.62e-05
Smp_165510.1 Smp_035200.3 0.92 8.67e-07 4.82e-05
Smp_182030.1 Smp_035200.3 0.90 4.64e-06 1.00e-04
Smp_182090.1 Smp_035200.3 0.90 3.28e-06 1.00e-04
Smp_184400.1 Smp_035200.3 0.90 3.59e-06 1.00e-04
Smp_184710.1 Smp_035200.3 0.92 9.56e-07 5.17e-05
Smp_185080.1 Smp_035200.3 0.91 1.95e-06 8.56e-05
Smp_185370.1 Smp_035200.3 0.91 1.39e-06 6.75e-05
Smp_185440.1 Smp_035200.3 0.95 3.71e-08 5.51e-06
Smp_185560.1 Smp_035200.3 0.94 8.07e-08 9.35e-06
Smp_199850.1 Smp_035200.3 0.90 2.66e-06 1.00e-04
Smp_200970.1 Smp_035200.3 0.90 3.55e-06 1.00e-04
Smp_202490.1 Smp_035200.3 0.90 3.03e-06 1.00e-04
Smp_205280.1 Smp_035200.3 0.95 4.50e-08 6.29e-06
Smp_205450.1 Smp_035200.3 0.91 2.38e-06 9.84e-05
Smp_205460.1 Smp_035200.3 0.91 1.66e-06 7.63e-05