Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_035200.2 Data

Correlation between Smp_035200.2 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_035200.2 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_035200.2 0 2.64 4.29 0.34 1.53

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035200.2 SmLINC00372-IBu 0.88 1.20e-05 3.00e-04
Smp_035200.2 SmLINC02646-IBu 0.87 2.21e-05 4.00e-04
Smp_035200.2 SmLINC04430-IBu 0.86 2.64e-05 5.00e-04
Smp_035200.2 SmLINC05559-IBu 0.86 3.57e-05 6.00e-04
Smp_035200.2 SmLINC06700-IBu 0.98 2.98e-11 4.97e-08
Smp_035200.2 SmLINC06836-IBu 0.91 1.99e-06 8.38e-05

Correlation between Smp_035200.2 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_035200.2 0 2.64 4.29 0.34 1.53
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_099160.4 0 11.96 13.30 11.03 12.32

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035200.2 Smp_032120.1 0.90 2.56e-06 1.00e-04
Smp_035200.2 Smp_034840.1 0.90 3.70e-06 1.00e-04
Smp_035200.2 Smp_036270.3 0.92 7.75e-07 4.46e-05
Smp_062610.2 Smp_035200.2 0.90 3.72e-06 1.00e-04
Smp_063650.3 Smp_035200.2 0.99 7.43e-14 1.35e-09
Smp_035200.2 Smp_099160.4 0.90 2.84e-06 1.00e-04