Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_035090.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035090.2 SmLINC02255-IBu 0.90 3.62e-06 1.00e-04
Smp_035090.2 SmLINC02630-IBu 0.84 7.37e-05 1.10e-03
Smp_035090.2 SmLINC02657-IBu 0.91 1.40e-06 6.54e-05
Smp_035090.2 SmLINC02888-IBu 0.82 1.00e-04 2.10e-03
Smp_035090.2 SmLINC03769-IBu 0.87 2.04e-05 4.00e-04
Smp_035090.2 SmLINC04957-IBu 0.83 1.00e-04 1.50e-03
Smp_035090.2 SmLINC05274-IBu 0.80 2.00e-04 2.90e-03
Smp_035090.2 SmLINC05284-IBu 0.82 1.00e-04 2.10e-03
Smp_035090.2 SmLINC05989-IBu 0.90 3.65e-06 1.00e-04
Smp_035090.2 SmLINC06128-IBu 0.92 9.37e-07 4.90e-05
Smp_035090.2 SmLINC06535-IBu 0.82 1.00e-04 1.70e-03
Smp_035090.2 SmLINC06890-IBu 0.82 1.00e-04 1.70e-03
Smp_035090.2 SmLINC06903-IBu 0.92 1.04e-06 5.30e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00225-IBu 0 -1.26 -2.72 -4.38 -4.83
SmLINC00565-IBu 0 -1.33 -5.82 -10.51 -4.87
SmLINC00998-IBu 0 -1.77 -2.82 -9.23 -9.23
SmLINC01234-IBu 0 -1.15 -2.33 -5.84 -5.11
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02325-IBu 0 -1.21 -1.93 -6.00 -7.20
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03574-IBu 0 -1.17 -2.16 -3.29 -5.27
SmLINC05776-IBu 0 -0.86 -1.87 -3.92 -4.94
SmLINC05923-IBu 0 -1.03 -3.25 -9.59 -7.30
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06240-IBu 0 -1.33 -10.34 -6.03 -6.09
SmLINC06405-IBu 0 -1.11 -2.49 -5.22 -6.11
SmLINC06441-IBu 0 -0.94 -2.22 -5.00 -6.40
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
SmLINC07001-IBu 0 -1.21 -2.11 -6.65 -6.97
Smp_014400.3 0 -1.41 -3.60 -7.89 -6.71
Smp_014400.5 0 -2.15 -4.06 -6.32 -9.42
Smp_017290.4 0 0.46 2.13 3.80 4.43
Smp_021730.1 0 -2.52 -3.78 -4.00 -3.90
Smp_028990.1 0 -1.33 -2.19 -4.19 -4.50
Smp_030500.1 0 -2.77 -6.42 -6.74 -6.44
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_035310.1 0 -1.02 -2.20 -5.71 -5.71
Smp_038100.1 0 -2.11 -3.55 -4.08 -3.42
Smp_038530.1 0 -2.20 -4.62 -4.98 -6.68
Smp_038730.10 0 -0.83 -3.49 -7.38 -8.47
Smp_041730.3 0 -1.60 -3.22 -4.30 -5.22
Smp_042160.2 0 -1.15 -4.96 -5.11 -6.09
Smp_042280.1 0 -0.52 0.36 2.84 3.46
Smp_046930.1 0 -0.70 -2.23 -5.64 -6.64
Smp_050830.1 0 -1.69 -2.62 -4.49 -4.19
Smp_051070.1 0 0.99 2.32 3.90 4.45
Smp_051230.3 0 -1.49 -4.66 -6.27 -4.15
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50
Smp_055210.1 0 -1.70 -3.76 -4.03 -3.39
Smp_056940.1 0 -1.14 -2.37 -4.99 -4.95
Smp_061870.1 0 -2.53 -4.47 -5.29 -5.38
Smp_063090.1 0 -2.16 -4.16 -3.57 -3.93
Smp_068780.2 0 -0.91 -1.96 -5.22 -4.63
Smp_071050.1 0 1.37 1.31 3.40 4.43
Smp_072110.1 0 -1.08 -3.84 -5.58 -4.73
Smp_074570.1 0 -1.85 -4.23 -8.15 -8.27
Smp_076010.1 0 -2.03 -5.17 -3.81 -3.82
Smp_079220.1 0 -2.48 -4.55 -6.52 -5.99
Smp_081790.1 0 0.27 0.87 3.44 3.91
Smp_083340.1 0 -1.27 -1.69 -7.43 -6.68
Smp_083720.1 0 -2.37 -5.50 -6.31 -5.77
Smp_088950.1 0 -0.37 2.54 3.00 4.07
Smp_092320.1 0 -1.82 -3.08 -5.42 -5.28
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_104000.1 0 0.62 1.49 3.28 4.39
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_125090.1 0 -1.49 -2.90 -8.82 -8.63
Smp_126470.1 0 1.38 2.58 4.77 5.50
Smp_131320.1 0 -0.70 -1.85 -4.63 -4.85
Smp_133310.1 0 -1.74 -4.20 -4.35 -4.73
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_141630.1 0 -0.98 -2.37 -8.56 -9.70
Smp_144920.1 0 0.61 2.49 4.01 4.87
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_147090.1 0 -1.07 -2.38 -5.49 -4.74
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_152730.1 0 -0.96 -1.50 -5.44 -5.88
Smp_153540.1 0 -0.31 2.57 4.90 5.84
Smp_154020.1 0 -1.89 -2.51 -3.88 -5.45
Smp_154250.1 0 -0.91 -2.50 -5.33 -5.48
Smp_156460.1 0 0.33 1.81 3.22 4.15
Smp_157450.1 0 -1.07 -2.97 -4.27 -4.05
Smp_159600.1 0 -1.24 -3.76 -4.15 -5.60
Smp_159900.1 0 -1.03 -2.21 -4.34 -4.82
Smp_161000.2 0 -1.02 -2.38 -7.73 -8.46
Smp_162370.1 0 -1.45 -4.56 -9.04 -5.93
Smp_166950.1 0 -1.86 -2.33 -5.56 -4.94
Smp_167000.1 0 0.21 1.53 3.39 4.01
Smp_167900.1 0 2.31 3.06 5.33 6.34
Smp_174560.1 0 -1.74 -2.28 -5.34 -5.48
Smp_175890.1 0 -0.96 -2.50 -8.62 -9.58
Smp_178530.1 0 -1.33 -2.48 -5.11 -6.02
Smp_179270.1 0 -1.07 -3.21 -9.00 -8.54
Smp_180920.1 0 2.38 4.29 4.89 5.30
Smp_182910.1 0 -1.24 -2.03 -6.37 -6.64
Smp_184750.1 0 -1.93 -3.13 -4.74 -4.46
Smp_185180.1 0 -1.60 -2.75 -5.44 -6.67
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96
Smp_186960.1 0 -1.00 -1.76 -4.20 -4.74
Smp_187350.1 0 -1.35 -2.38 -8.77 -9.63
Smp_194770.1 0 -2.35 -7.85 -7.77 -7.92
Smp_195140.1 0 -1.78 -5.21 -6.28 -8.26
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_197110.1 0 -1.94 -2.50 -4.24 -4.44
Smp_198950.1 0 -0.98 -2.10 -5.57 -7.76
Smp_202690.1 0 2.99 3.08 5.69 6.36
Smp_204050.1 0 0.77 1.82 3.81 4.33
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70
Smp_210920.1 0 0.05 2.33 3.47 4.04
Smp_212290.1 0 -0.97 -5.67 -5.14 -6.52
Smp_212390.1 0 -0.91 -2.72 -3.77 -5.20
Smp_213890.1 0 -1.00 -1.46 -4.08 -4.51
Smp_214020.1 0 1.35 2.40 4.26 4.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035090.2 SmLINC00225-IBu 0.92 6.78e-07 4.06e-05
Smp_035090.2 SmLINC00565-IBu 0.90 2.98e-06 1.00e-04
Smp_035090.2 SmLINC00998-IBu 0.95 5.97e-08 7.61e-06
Smp_035090.2 SmLINC01234-IBu 0.96 8.79e-09 2.09e-06
Smp_035090.2 SmLINC02255-IBu 0.90 3.62e-06 1.00e-04
Smp_035090.2 SmLINC02325-IBu 0.96 6.27e-09 1.67e-06
Smp_035090.2 SmLINC02657-IBu 0.91 1.40e-06 6.79e-05
Smp_035090.2 SmLINC03574-IBu 0.92 1.13e-06 5.82e-05
Smp_035090.2 SmLINC05776-IBu 0.93 3.29e-07 2.46e-05
Smp_035090.2 SmLINC05923-IBu 0.93 4.87e-07 3.22e-05
Smp_035090.2 SmLINC05989-IBu 0.90 3.65e-06 1.00e-04
Smp_035090.2 SmLINC06128-IBu 0.92 9.37e-07 5.10e-05
Smp_035090.2 SmLINC06240-IBu 0.91 1.55e-06 7.27e-05
Smp_035090.2 SmLINC06405-IBu 0.94 1.52e-07 1.44e-05
Smp_035090.2 SmLINC06441-IBu 0.93 4.10e-07 2.86e-05
Smp_035090.2 SmLINC06903-IBu 0.92 1.04e-06 5.51e-05
Smp_035090.2 SmLINC07001-IBu 0.95 3.38e-08 5.19e-06
Smp_014400.3 Smp_035090.2 0.94 6.57e-08 8.12e-06
Smp_014400.5 Smp_035090.2 0.93 4.31e-07 2.96e-05
Smp_017290.4 Smp_035090.2 -0.93 3.84e-07 2.73e-05
Smp_035090.2 Smp_021730.1 0.90 4.55e-06 1.00e-04
Smp_028990.1 Smp_035090.2 0.93 3.25e-07 2.43e-05
Smp_030500.1 Smp_035090.2 0.91 2.31e-06 9.63e-05
Smp_034940.3 Smp_035090.2 0.91 1.29e-06 6.41e-05
Smp_035310.1 Smp_035090.2 0.95 5.76e-08 7.43e-06
Smp_038100.1 Smp_035090.2 0.93 2.77e-07 2.18e-05
Smp_038530.1 Smp_035090.2 0.92 7.04e-07 4.17e-05
Smp_038730.10 Smp_035090.2 0.93 3.31e-07 2.47e-05
Smp_041730.3 Smp_035090.2 0.91 1.53e-06 7.20e-05
Smp_042160.2 Smp_035090.2 0.94 1.48e-07 1.41e-05
Smp_035090.2 Smp_042280.1 -0.91 1.96e-06 8.58e-05
Smp_046930.1 Smp_035090.2 0.93 2.82e-07 2.21e-05
Smp_035090.2 Smp_050830.1 0.96 7.42e-09 1.87e-06
Smp_051070.1 Smp_035090.2 -0.91 2.29e-06 9.57e-05
Smp_035090.2 Smp_051230.3 0.92 9.76e-07 5.24e-05
Smp_052060.1 Smp_035090.2 0.90 3.29e-06 1.00e-04
Smp_055210.1 Smp_035090.2 0.97 1.94e-09 7.79e-07
Smp_056940.1 Smp_035090.2 0.91 2.02e-06 8.77e-05
Smp_061870.1 Smp_035090.2 0.90 4.10e-06 1.00e-04
Smp_063090.1 Smp_035090.2 0.91 1.25e-06 6.28e-05
Smp_068780.2 Smp_035090.2 0.93 4.85e-07 3.21e-05
Smp_071050.1 Smp_035090.2 -0.90 4.52e-06 1.00e-04
Smp_072110.1 Smp_035090.2 0.95 3.82e-08 5.63e-06
Smp_074570.1 Smp_035090.2 0.91 1.44e-06 6.91e-05
Smp_076010.1 Smp_035090.2 0.90 4.19e-06 1.00e-04
Smp_035090.2 Smp_079220.1 0.93 3.34e-07 2.48e-05
Smp_081790.1 Smp_035090.2 -0.92 6.50e-07 3.94e-05
Smp_083340.1 Smp_035090.2 0.91 1.39e-06 6.74e-05
Smp_083720.1 Smp_035090.2 0.93 4.47e-07 3.03e-05
Smp_088950.1 Smp_035090.2 -0.90 3.64e-06 1.00e-04
Smp_092320.1 Smp_035090.2 0.96 7.24e-09 1.84e-06
Smp_097750.1 Smp_035090.2 0.90 3.18e-06 1.00e-04
Smp_104000.1 Smp_035090.2 -0.92 7.66e-07 4.42e-05
Smp_109240.1 Smp_035090.2 0.92 1.08e-06 5.64e-05
Smp_125090.1 Smp_035090.2 0.95 3.79e-08 5.60e-06
Smp_035090.2 Smp_126470.1 -0.92 9.96e-07 5.32e-05
Smp_035090.2 Smp_131320.1 0.90 3.86e-06 1.00e-04
Smp_133310.1 Smp_035090.2 0.92 7.75e-07 4.46e-05
Smp_134410.1 Smp_035090.2 0.94 8.93e-08 1.00e-05
Smp_141630.1 Smp_035090.2 0.96 3.70e-09 1.18e-06
Smp_144920.1 Smp_035090.2 -0.91 2.33e-06 9.68e-05
Smp_145710.1 Smp_035090.2 0.92 8.21e-07 4.64e-05
Smp_147090.1 Smp_035090.2 0.93 2.01e-07 1.75e-05
Smp_149670.1 Smp_035090.2 0.93 4.07e-07 2.85e-05
Smp_152730.1 Smp_035090.2 0.90 2.60e-06 1.00e-04
Smp_153540.1 Smp_035090.2 -0.91 1.95e-06 8.56e-05
Smp_154020.1 Smp_035090.2 0.92 8.35e-07 4.70e-05
Smp_154250.1 Smp_035090.2 0.95 2.72e-08 4.47e-06
Smp_156460.1 Smp_035090.2 -0.91 1.54e-06 7.25e-05
Smp_157450.1 Smp_035090.2 0.90 2.83e-06 1.00e-04
Smp_159600.1 Smp_035090.2 0.92 1.19e-06 6.04e-05
Smp_035090.2 Smp_159900.1 0.93 2.55e-07 2.06e-05
Smp_161000.2 Smp_035090.2 0.93 3.14e-07 2.38e-05
Smp_162370.1 Smp_035090.2 0.93 2.45e-07 2.00e-05
Smp_166950.1 Smp_035090.2 0.94 1.32e-07 1.31e-05
Smp_167000.1 Smp_035090.2 -0.91 1.88e-06 8.34e-05
Smp_167900.1 Smp_035090.2 -0.90 3.31e-06 1.00e-04
Smp_174560.1 Smp_035090.2 0.92 7.23e-07 4.25e-05
Smp_175890.1 Smp_035090.2 0.91 1.30e-06 6.42e-05
Smp_035090.2 Smp_178530.1 0.93 2.21e-07 1.86e-05
Smp_179270.1 Smp_035090.2 0.92 7.90e-07 4.52e-05
Smp_180920.1 Smp_035090.2 -0.90 2.90e-06 1.00e-04
Smp_182910.1 Smp_035090.2 0.95 3.18e-08 4.97e-06
Smp_184750.1 Smp_035090.2 0.95 3.75e-08 5.55e-06
Smp_185180.1 Smp_035090.2 0.90 2.96e-06 1.00e-04
Smp_185220.1 Smp_035090.2 0.90 4.86e-06 1.00e-04
Smp_035090.2 Smp_186960.1 0.91 1.86e-06 8.26e-05
Smp_187350.1 Smp_035090.2 0.97 2.05e-09 8.08e-07
Smp_194770.1 Smp_035090.2 0.92 6.30e-07 3.86e-05
Smp_195140.1 Smp_035090.2 0.90 3.43e-06 1.00e-04
Smp_195160.1 Smp_035090.2 0.96 1.26e-08 2.67e-06
Smp_197110.1 Smp_035090.2 0.93 4.55e-07 3.08e-05
Smp_198950.1 Smp_035090.2 0.92 6.71e-07 4.03e-05
Smp_202690.1 Smp_035090.2 -0.92 6.08e-07 3.76e-05
Smp_204050.1 Smp_035090.2 -0.91 1.86e-06 8.29e-05
Smp_206200.1 Smp_035090.2 0.92 9.26e-07 5.05e-05
Smp_210920.1 Smp_035090.2 -0.90 2.78e-06 1.00e-04
Smp_212290.1 Smp_035090.2 0.90 3.40e-06 1.00e-04
Smp_035090.2 Smp_212390.1 0.93 4.24e-07 2.93e-05
Smp_213890.1 Smp_035090.2 0.92 5.51e-07 3.51e-05
Smp_214020.1 Smp_035090.2 -0.92 1.05e-06 5.55e-05