Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_034940.3 Data

Correlation between Smp_034940.3 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_034940.3 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034940.3 SmLINC02255-IBu 0.83 9.05e-05 1.30e-03
Smp_034940.3 SmLINC02657-IBu 0.84 6.16e-05 9.00e-04
Smp_034940.3 SmLINC03769-IBu 0.91 1.77e-06 7.72e-05
Smp_034940.3 SmLINC04957-IBu 0.88 1.10e-05 2.00e-04
Smp_034940.3 SmLINC05989-IBu 0.84 6.30e-05 1.00e-03
Smp_034940.3 SmLINC05990-IBu -0.80 3.00e-04 3.30e-03
Smp_034940.3 SmLINC06128-IBu 0.93 3.51e-07 2.45e-05
Smp_034940.3 SmLINC06890-IBu 0.81 1.00e-04 2.20e-03
Smp_034940.3 SmLINC06903-IBu 0.90 4.23e-06 1.00e-04

Correlation between Smp_034940.3 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00225-IBu 0 -1.26 -2.72 -4.38 -4.83
SmLINC00998-IBu 0 -1.77 -2.82 -9.23 -9.23
SmLINC01234-IBu 0 -1.15 -2.33 -5.84 -5.11
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06240-IBu 0 -1.33 -10.34 -6.03 -6.09
SmLINC06441-IBu 0 -0.94 -2.22 -5.00 -6.40
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_014400.5 0 -2.15 -4.06 -6.32 -9.42
Smp_018510.1 0 -0.95 -2.76 -7.05 -6.82
Smp_030500.1 0 -2.77 -6.42 -6.74 -6.44
Smp_033400.1 0 -2.69 -7.71 -5.07 -4.27
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_038100.1 0 -2.11 -3.55 -4.08 -3.42
Smp_038730.10 0 -0.83 -3.49 -7.38 -8.47
Smp_042160.2 0 -1.15 -4.96 -5.11 -6.09
Smp_051230.3 0 -1.49 -4.66 -6.27 -4.15
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_063090.1 0 -2.16 -4.16 -3.57 -3.93
Smp_072190.1 0 2.22 3.60 4.36 5.21
Smp_074200.1 0 -1.40 -4.07 -6.05 -6.98
Smp_079220.1 0 -2.48 -4.55 -6.52 -5.99
Smp_083720.1 0 -2.37 -5.50 -6.31 -5.77
Smp_088610.1 0 -1.02 -3.23 -3.96 -5.44
Smp_092320.1 0 -1.82 -3.08 -5.42 -5.28
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_124150.1 0 -1.14 -4.97 -8.99 -7.14
Smp_125090.1 0 -1.49 -2.90 -8.82 -8.63
Smp_133310.1 0 -1.74 -4.20 -4.35 -4.73
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_139790.1 0 -0.75 -6.56 -6.76 -3.63
Smp_141630.1 0 -0.98 -2.37 -8.56 -9.70
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_154370.1 0 -2.82 -7.17 -3.52 -2.90
Smp_157450.1 0 -1.07 -2.97 -4.27 -4.05
Smp_159600.1 0 -1.24 -3.76 -4.15 -5.60
Smp_160000.2 0 6.42 8.33 8.49 8.70
Smp_162370.1 0 -1.45 -4.56 -9.04 -5.93
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_178400.1 0 -0.69 -3.92 -8.55 -3.91
Smp_178530.1 0 -1.33 -2.48 -5.11 -6.02
Smp_178620.1 0 -1.14 -2.86 -9.00 -9.00
Smp_184750.1 0 -1.93 -3.13 -4.74 -4.46
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96
Smp_187350.1 0 -1.35 -2.38 -8.77 -9.63
Smp_194770.1 0 -2.35 -7.85 -7.77 -7.92
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_195140.1 0 -1.78 -5.21 -6.28 -8.26
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_197110.1 0 -1.94 -2.50 -4.24 -4.44
Smp_198950.1 0 -0.98 -2.10 -5.57 -7.76
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70
Smp_212290.1 0 -0.97 -5.67 -5.14 -6.52

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034940.3 SmLINC00225-IBu 0.90 3.02e-06 1.00e-04
Smp_034940.3 SmLINC00998-IBu 0.94 1.41e-07 1.37e-05
Smp_034940.3 SmLINC01234-IBu 0.92 6.32e-07 3.87e-05
Smp_034940.3 SmLINC03769-IBu 0.91 1.77e-06 8.00e-05
Smp_034940.3 SmLINC06128-IBu 0.93 3.51e-07 2.57e-05
Smp_034940.3 SmLINC06240-IBu 0.97 1.83e-09 7.50e-07
Smp_034940.3 SmLINC06441-IBu 0.91 1.38e-06 6.69e-05
Smp_034940.3 SmLINC06903-IBu 0.90 4.23e-06 1.00e-04
Smp_014400.5 Smp_034940.3 0.91 2.38e-06 9.85e-05
Smp_018510.1 Smp_034940.3 0.92 6.38e-07 3.89e-05
Smp_030500.1 Smp_034940.3 0.90 4.53e-06 1.00e-04
Smp_033400.1 Smp_034940.3 0.92 8.98e-07 4.94e-05
Smp_034940.3 Smp_035090.2 0.91 1.29e-06 6.41e-05
Smp_034940.3 Smp_038100.1 0.91 2.04e-06 8.83e-05
Smp_034940.3 Smp_038730.10 0.90 3.00e-06 1.00e-04
Smp_034940.3 Smp_042160.2 0.94 1.85e-07 1.65e-05
Smp_034940.3 Smp_051230.3 0.95 3.01e-08 4.79e-06
Smp_034940.3 Smp_051230.4 0.90 2.58e-06 1.00e-04
Smp_063090.1 Smp_034940.3 0.91 1.27e-06 6.34e-05
Smp_034940.3 Smp_072190.1 -0.90 3.87e-06 1.00e-04
Smp_034940.3 Smp_074200.1 0.96 3.65e-09 1.17e-06
Smp_034940.3 Smp_079220.1 0.90 4.37e-06 1.00e-04
Smp_034940.3 Smp_083720.1 0.92 5.23e-07 3.39e-05
Smp_034940.3 Smp_088610.1 0.93 3.89e-07 2.76e-05
Smp_034940.3 Smp_092320.1 0.91 1.24e-06 6.22e-05
Smp_034940.3 Smp_109240.1 0.96 3.01e-09 1.03e-06
Smp_034940.3 Smp_110400.3 0.91 1.26e-06 6.28e-05
Smp_034940.3 Smp_124150.1 0.95 3.01e-08 4.79e-06
Smp_034940.3 Smp_125090.1 0.91 1.68e-06 7.71e-05
Smp_034940.3 Smp_133310.1 0.92 1.12e-06 5.78e-05
Smp_034940.3 Smp_134410.1 0.94 1.34e-07 1.32e-05
Smp_034940.3 Smp_139790.1 0.92 5.61e-07 3.56e-05
Smp_034940.3 Smp_141630.1 0.90 4.40e-06 1.00e-04
Smp_034940.3 Smp_145710.1 0.92 5.58e-07 3.54e-05
Smp_034940.3 Smp_154370.1 0.90 3.20e-06 1.00e-04
Smp_034940.3 Smp_157450.1 0.94 1.68e-07 1.54e-05
Smp_034940.3 Smp_159600.1 0.91 2.02e-06 8.78e-05
Smp_034940.3 Smp_160000.2 -0.90 3.32e-06 1.00e-04
Smp_034940.3 Smp_162370.1 0.95 4.35e-08 6.15e-06
Smp_034940.3 Smp_168080.2 0.91 1.37e-06 6.66e-05
Smp_034940.3 Smp_178400.1 0.91 1.92e-06 8.47e-05
Smp_034940.3 Smp_178530.1 0.91 1.47e-06 7.01e-05
Smp_034940.3 Smp_178620.1 0.90 3.18e-06 1.00e-04
Smp_034940.3 Smp_184750.1 0.91 1.73e-06 7.88e-05
Smp_034940.3 Smp_185220.1 0.93 3.64e-07 2.63e-05
Smp_034940.3 Smp_187350.1 0.90 2.72e-06 1.00e-04
Smp_034940.3 Smp_194770.1 0.92 7.29e-07 4.27e-05
Smp_034940.3 Smp_195070.1 0.91 1.32e-06 6.50e-05
Smp_034940.3 Smp_195140.1 0.95 4.88e-08 6.64e-06
Smp_034940.3 Smp_195160.1 0.95 2.16e-08 3.82e-06
Smp_034940.3 Smp_197110.1 0.90 3.12e-06 1.00e-04
Smp_034940.3 Smp_198950.1 0.91 1.45e-06 6.93e-05
Smp_034940.3 Smp_206200.1 0.91 2.04e-06 8.83e-05
Smp_034940.3 Smp_212290.1 0.90 2.65e-06 1.00e-04