Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_034840.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_034840.1 0 12.23 13.88 0.00 0.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034840.1 SmLINC00372-IBu 0.94 9.09e-08 9.61e-06
Smp_034840.1 SmLINC01316-IBu 0.87 1.94e-05 4.00e-04
Smp_034840.1 SmLINC02646-IBu 0.83 1.00e-04 1.40e-03
Smp_034840.1 SmLINC04947-IBu 0.81 2.00e-04 2.50e-03
Smp_034840.1 SmLINC05559-IBu 0.88 1.07e-05 2.00e-04
Smp_034840.1 SmLINC06646-IBu 0.86 3.25e-05 6.00e-04
Smp_034840.1 SmLINC06700-IBu 0.90 4.33e-06 1.00e-04
Smp_034840.1 SmLINC06836-IBu 0.95 2.76e-08 4.24e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC00513-IBu 0 6.74 8.35 0.00 3.11
SmLINC00781-IBu 0 6.19 6.44 3.58 2.95
SmLINC02626-IBu 0 8.15 9.29 3.73 6.59
SmLINC02970-IBu 0 2.59 3.54 0.54 -1.36
SmLINC03132-IBu 0 3.76 4.91 1.54 -0.47
SmLINC03953-IBu 0 1.67 3.25 -2.76 -1.08
SmLINC04215-IBu 0 6.59 8.42 5.71 3.29
SmLINC05348-IBu 0 -0.21 0.48 -2.93 -5.35
SmLINC05660-IBu 0 5.07 6.19 0.00 6.57
SmLINC06048-IBu 0 0.79 1.93 -4.19 -7.12
SmLINC06241-IBu 0 2.77 5.19 0.64 -7.79
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_006830.2 0 -0.57 2.34 -5.80 -4.64
Smp_011270.3 0 -0.96 1.19 -5.18 -3.39
Smp_014660.1 0 1.27 2.34 -5.37 -7.50
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_018800.1 0 3.14 4.22 -2.08 -1.80
Smp_019940.5 0 1.01 3.12 -6.73 1.95
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_024820.1 0 4.10 4.75 1.46 1.82
Smp_027990.1 0 1.00 2.03 -4.13 -5.46
Smp_031770.3 0 0.52 1.55 -9.48 -9.48
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_032320.2 0 -0.17 0.68 -9.42 -9.42
Smp_033670.2 0 1.59 2.15 -4.87 -4.87
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_035200.2 0 2.64 4.29 0.34 1.53
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_049600.3 0 1.80 2.94 -9.17 -1.90
Smp_052290.1 0 1.68 2.86 -1.36 -2.94
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_075290.4 0 0.20 2.62 -2.13 -0.42
Smp_076040.2 0 -0.64 1.55 -9.83 -9.83
Smp_079260.1 0 1.54 2.23 -2.79 -3.15
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_099560.1 0 8.15 8.89 -2.27 -2.27
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_103930.1 0 0.87 2.20 -7.48 0.71
Smp_118960.1 0 -0.29 0.29 -8.48 -0.88
Smp_123870.1 0 -0.64 -0.72 -4.74 -5.09
Smp_125830.1 0 3.00 3.31 -4.80 -4.80
Smp_126560.1 0 1.05 1.45 -4.09 -4.98
Smp_136120.1 0 5.65 6.93 4.13 3.70
Smp_139170.1 0 2.45 4.33 0.78 0.06
Smp_139940.1 0 3.07 4.50 -0.39 -2.02
Smp_141630.4 0 12.63 13.76 12.50 12.34
Smp_142980.1 0 0.95 0.31 -2.54 -3.71
Smp_143180.1 0 1.31 2.18 -4.27 -1.25
Smp_144350.1 0 2.33 4.53 0.32 -0.03
Smp_145950.1 0 1.16 2.62 -4.07 -0.95
Smp_146920.1 0 0.99 1.37 -7.20 -7.20
Smp_148110.1 0 1.60 3.38 -2.98 -3.24
Smp_149870.1 0 0.08 0.15 -3.14 -8.77
Smp_152170.1 0 2.88 3.15 -0.68 -0.83
Smp_152540.1 0 3.53 6.32 3.87 4.18
Smp_153210.1 0 3.24 5.11 0.30 -0.00
Smp_153650.1 0 -0.02 1.72 -2.93 -3.55
Smp_155250.1 0 4.57 5.88 4.24 2.03
Smp_157270.1 0 3.45 4.02 -0.36 -1.80
Smp_157280.1 0 4.32 5.40 2.85 1.60
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159070.4 0 3.29 5.54 2.90 0.83
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_169500.1 0 1.36 1.90 -2.93 -5.45
Smp_174170.1 0 2.27 3.86 1.11 -0.90
Smp_174750.1 0 1.35 2.65 -1.87 -1.39
Smp_175300.1 0 6.82 9.29 5.85 5.56
Smp_180630.1 0 0.12 1.09 -6.32 -9.26
Smp_184370.1 0 -1.11 0.66 -3.32 -4.28
Smp_188230.1 0 2.60 5.01 2.53 1.16
Smp_190370.1 0 1.12 2.62 -1.76 -2.23
Smp_196410.1 0 0.98 1.80 -3.57 -2.94
Smp_212600.1 0 2.41 4.90 2.41 2.00

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034840.1 SmLINC00372-IBu 0.94 9.09e-08 1.01e-05
Smp_034840.1 SmLINC00513-IBu 0.91 1.85e-06 8.23e-05
Smp_034840.1 SmLINC00781-IBu 0.92 8.89e-07 4.91e-05
Smp_034840.1 SmLINC02626-IBu 0.97 3.36e-10 2.54e-07
Smp_034840.1 SmLINC02970-IBu 0.94 1.49e-07 1.42e-05
Smp_034840.1 SmLINC03132-IBu 0.98 2.31e-11 4.65e-08
Smp_034840.1 SmLINC03953-IBu 0.93 3.62e-07 2.62e-05
Smp_034840.1 SmLINC04215-IBu 0.96 2.65e-09 9.56e-07
Smp_034840.1 SmLINC05348-IBu 0.91 2.09e-06 8.97e-05
Smp_034840.1 SmLINC05660-IBu 0.92 1.13e-06 5.82e-05
Smp_034840.1 SmLINC06048-IBu 0.94 1.08e-07 1.14e-05
Smp_034840.1 SmLINC06241-IBu 0.93 2.30e-07 1.92e-05
Smp_034840.1 SmLINC06700-IBu 0.90 4.33e-06 1.00e-04
Smp_034840.1 SmLINC06836-IBu 0.95 2.76e-08 4.51e-06
Smp_006830.2 Smp_034840.1 0.91 2.24e-06 9.43e-05
Smp_011270.3 Smp_034840.1 0.90 3.00e-06 1.00e-04
Smp_014660.1 Smp_034840.1 0.90 4.38e-06 1.00e-04
Smp_034840.1 Smp_017650.1 0.95 1.85e-08 3.45e-06
Smp_034840.1 Smp_018800.1 0.94 6.21e-08 7.82e-06
Smp_019940.5 Smp_034840.1 0.91 1.84e-06 8.20e-05
Smp_034840.1 Smp_021340.3 0.92 7.37e-07 4.31e-05
Smp_024820.1 Smp_034840.1 0.92 7.78e-07 4.47e-05
Smp_027990.1 Smp_034840.1 0.94 8.20e-08 9.45e-06
Smp_031770.3 Smp_034840.1 0.92 5.84e-07 3.66e-05
Smp_034840.1 Smp_032120.1 0.96 9.38e-09 2.18e-06
Smp_032320.2 Smp_034840.1 0.91 2.46e-06 1.00e-04
Smp_034840.1 Smp_033670.2 0.92 6.15e-07 3.79e-05
Smp_035200.2 Smp_034840.1 0.90 3.70e-06 1.00e-04
Smp_034840.1 Smp_036270.3 0.94 8.92e-08 1.00e-05
Smp_049600.3 Smp_034840.1 0.96 3.92e-09 1.23e-06
Smp_034840.1 Smp_052290.1 0.96 5.26e-09 1.49e-06
Smp_034840.1 Smp_059340.3 0.94 1.77e-07 1.60e-05
Smp_059530.1 Smp_034840.1 0.95 3.66e-08 5.47e-06
Smp_034840.1 Smp_062070.1 0.94 1.40e-07 1.36e-05
Smp_062610.2 Smp_034840.1 0.92 5.51e-07 3.51e-05
Smp_063650.3 Smp_034840.1 0.93 3.14e-07 2.38e-05
Smp_075290.4 Smp_034840.1 0.96 1.02e-08 2.32e-06
Smp_076040.2 Smp_034840.1 0.93 2.79e-07 2.19e-05
Smp_079260.1 Smp_034840.1 0.95 3.50e-08 5.30e-06
Smp_034840.1 Smp_083380.2 0.97 4.04e-10 2.85e-07
Smp_034840.1 Smp_084940.2 0.97 1.22e-09 5.79e-07
Smp_098370.1 Smp_034840.1 0.92 7.25e-07 4.25e-05
Smp_034840.1 Smp_099160.4 0.90 4.29e-06 1.00e-04
Smp_099560.1 Smp_034840.1 0.91 1.48e-06 7.04e-05
Smp_103540.1 Smp_034840.1 0.96 7.84e-09 1.94e-06
Smp_103930.1 Smp_034840.1 0.95 2.87e-08 4.64e-06
Smp_118960.1 Smp_034840.1 0.91 1.20e-06 6.07e-05
Smp_034840.1 Smp_123870.1 0.90 3.26e-06 1.00e-04
Smp_125830.1 Smp_034840.1 0.90 4.18e-06 1.00e-04
Smp_126560.1 Smp_034840.1 0.90 2.64e-06 1.00e-04
Smp_136120.1 Smp_034840.1 0.95 1.56e-08 3.07e-06
Smp_139170.1 Smp_034840.1 0.91 2.37e-06 9.80e-05
Smp_034840.1 Smp_139940.1 0.93 2.27e-07 1.90e-05
Smp_141630.4 Smp_034840.1 0.90 2.95e-06 1.00e-04
Smp_142980.1 Smp_034840.1 0.91 1.49e-06 7.10e-05
Smp_143180.1 Smp_034840.1 0.96 2.64e-09 9.53e-07
Smp_034840.1 Smp_144350.1 0.92 1.00e-06 5.34e-05
Smp_145950.1 Smp_034840.1 0.95 1.66e-08 3.21e-06
Smp_034840.1 Smp_146920.1 0.96 6.73e-09 1.75e-06
Smp_148110.1 Smp_034840.1 0.92 5.54e-07 3.53e-05
Smp_149870.1 Smp_034840.1 0.92 6.62e-07 3.99e-05
Smp_152170.1 Smp_034840.1 0.91 2.26e-06 9.49e-05
Smp_152540.1 Smp_034840.1 0.90 3.94e-06 1.00e-04
Smp_153210.1 Smp_034840.1 0.96 1.33e-08 2.76e-06
Smp_153650.1 Smp_034840.1 0.90 3.66e-06 1.00e-04
Smp_034840.1 Smp_155250.1 0.90 4.22e-06 1.00e-04
Smp_157270.1 Smp_034840.1 0.90 3.50e-06 1.00e-04
Smp_157280.1 Smp_034840.1 0.97 1.98e-09 7.91e-07
Smp_159070.3 Smp_034840.1 0.92 7.23e-07 4.25e-05
Smp_034840.1 Smp_159070.4 0.93 3.39e-07 2.51e-05
Smp_034840.1 Smp_159150.1 0.94 1.93e-07 1.70e-05
Smp_169500.1 Smp_034840.1 0.93 3.17e-07 2.39e-05
Smp_174170.1 Smp_034840.1 0.94 1.27e-07 1.27e-05
Smp_174750.1 Smp_034840.1 0.92 5.88e-07 3.68e-05
Smp_175300.1 Smp_034840.1 0.94 1.46e-07 1.40e-05
Smp_180630.1 Smp_034840.1 0.96 1.37e-08 2.81e-06
Smp_184370.1 Smp_034840.1 0.92 8.24e-07 4.65e-05
Smp_034840.1 Smp_188230.1 0.92 1.02e-06 5.44e-05
Smp_034840.1 Smp_190370.1 0.91 1.64e-06 7.58e-05
Smp_196410.1 Smp_034840.1 0.96 1.08e-08 2.40e-06
Smp_212600.1 Smp_034840.1 0.91 1.81e-06 8.13e-05