Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_034680.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03485-IBu 0 -0.93 -1.24 -9.54 -9.54
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
Smp_034680.1 0 -1.23 -1.04 -6.49 -1.58

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034680.1 SmLINC00369-IBu -0.84 8.38e-05 1.20e-03
Smp_034680.1 SmLINC00633-IBu -0.80 3.00e-04 3.20e-03
Smp_034680.1 SmLINC01122-IBu -0.80 3.00e-04 3.10e-03
Smp_034680.1 SmLINC01431-IBu -0.82 1.00e-04 1.70e-03
Smp_034680.1 SmLINC01538-IBu -0.80 2.00e-04 3.00e-03
Smp_034680.1 SmLINC01733-IBu -0.80 3.00e-04 3.20e-03
Smp_034680.1 SmLINC01746-IBu -0.81 2.00e-04 2.60e-03
Smp_034680.1 SmLINC03309-IBu -0.80 3.00e-04 3.30e-03
Smp_034680.1 SmLINC03485-IBu 0.80 2.00e-04 3.00e-03
Smp_034680.1 SmLINC04521-IBu -0.81 2.00e-04 2.40e-03
Smp_034680.1 SmLINC05258-IBu -0.81 2.00e-04 2.40e-03
Smp_034680.1 SmLINC05274-IBu 0.80 3.00e-04 3.30e-03
Smp_034680.1 SmLINC06145-IBu -0.81 2.00e-04 2.40e-03