Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_034420.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_034420.1 0 -1.76 -6.68 -4.27 -4.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034420.1 SmLINC06890-IBu 0.91 2.45e-06 9.71e-05
Smp_034420.1 SmLINC06903-IBu 0.82 1.00e-04 2.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_028990.3 0 -1.23 -2.49 -10.45 -10.45
Smp_034420.1 0 -1.76 -6.68 -4.27 -4.65
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
Smp_170800.1 0 -1.03 -10.36 -11.70 -1.07
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034420.1 Smp_028990.3 0.91 1.57e-06 7.35e-05
Smp_043670.2 Smp_034420.1 0.93 2.82e-07 2.21e-05
Smp_096020.1 Smp_034420.1 0.99 1.51e-14 5.08e-10
Smp_170800.1 Smp_034420.1 0.94 1.64e-07 1.52e-05
Smp_182890.1 Smp_034420.1 0.92 7.70e-07 4.44e-05
Smp_205860.1 Smp_034420.1 0.95 3.38e-08 5.18e-06