Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_033950.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
Smp_033950.3 0 10.15 11.01 9.52 8.41

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033950.3 SmLINC02646-IBu 0.80 3.00e-04 3.40e-03
Smp_033950.3 SmLINC06646-IBu 0.84 7.64e-05 1.10e-03
Smp_033950.3 SmLINC06700-IBu 0.81 1.00e-04 2.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02981-IBu 0 5.05 5.74 0.00 0.00
SmLINC07012-IBu 0 4.23 5.09 -1.27 -4.32
Smp_015070.2 0 4.80 5.60 1.08 -0.65
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_029240.1 0 3.97 4.74 2.59 1.22
Smp_032320.2 0 -0.17 0.68 -9.42 -9.42
Smp_032740.1 0 2.87 3.50 0.35 -1.77
Smp_033950.3 0 10.15 11.01 9.52 8.41
Smp_040970.3 0 11.70 13.01 5.20 8.78
Smp_091190.1 0 2.07 2.52 -8.48 -3.36
Smp_092320.2 0 10.35 10.97 10.62 9.79
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_139090.2 0 10.81 12.07 11.53 10.71
Smp_140130.1 0 1.66 2.18 -1.05 -2.58
Smp_141630.4 0 12.63 13.76 12.50 12.34
Smp_154170.1 0 1.83 3.24 -0.15 -1.26
Smp_155170.1 0 2.84 3.14 -1.92 0.05
Smp_171420.1 0 2.93 4.14 1.74 -0.67
Smp_204000.1 0 4.82 5.19 1.55 0.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033950.3 SmLINC02981-IBu 0.93 3.67e-07 2.65e-05
Smp_033950.3 SmLINC07012-IBu 0.93 2.54e-07 2.05e-05
Smp_033950.3 Smp_015070.2 0.92 9.07e-07 4.98e-05
Smp_033950.3 Smp_017650.1 0.90 2.63e-06 1.00e-04
Smp_033950.3 Smp_021340.3 0.95 4.09e-08 5.89e-06
Smp_029240.1 Smp_033950.3 0.96 2.53e-09 9.26e-07
Smp_033950.3 Smp_032320.2 0.91 2.03e-06 8.81e-05
Smp_033950.3 Smp_032740.1 0.94 1.16e-07 1.20e-05
Smp_040970.3 Smp_033950.3 0.91 2.07e-06 8.91e-05
Smp_091190.1 Smp_033950.3 0.92 7.02e-07 4.16e-05
Smp_092320.2 Smp_033950.3 0.91 2.38e-06 9.86e-05
Smp_033950.3 Smp_098370.1 0.90 2.97e-06 1.00e-04
Smp_033950.3 Smp_099160.4 0.94 1.68e-07 1.54e-05
Smp_033950.3 Smp_139090.2 0.91 1.73e-06 7.86e-05
Smp_140130.1 Smp_033950.3 0.93 5.11e-07 3.33e-05
Smp_033950.3 Smp_141630.4 0.91 1.84e-06 8.21e-05
Smp_033950.3 Smp_154170.1 0.90 3.38e-06 1.00e-04
Smp_033950.3 Smp_155170.1 0.94 6.55e-08 8.11e-06
Smp_171420.1 Smp_033950.3 0.92 5.88e-07 3.67e-05
Smp_204000.1 Smp_033950.3 0.94 1.88e-07 1.66e-05