Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_033930.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04144-IBu 0 2.82 -0.04 -0.46 -2.35
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06436-IBu 0 7.76 4.53 3.89 -2.06
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06669-IBu 0 8.70 4.94 4.70 6.60
Smp_033930.1 0 0.15 -3.24 -4.08 -3.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033930.1 SmLINC00026-IBu 0.91 2.48e-06 9.79e-05
Smp_033930.1 SmLINC00037-IBu 0.92 8.81e-07 4.69e-05
Smp_033930.1 SmLINC00133-IBu 0.92 9.29e-07 4.87e-05
Smp_033930.1 SmLINC00282-IBu 0.90 2.86e-06 1.00e-04
Smp_033930.1 SmLINC00294-IBu 0.85 5.17e-05 8.00e-04
Smp_033930.1 SmLINC00554-IBu 0.88 1.08e-05 2.00e-04
Smp_033930.1 SmLINC00556-IBu 0.81 2.00e-04 2.30e-03
Smp_033930.1 SmLINC00893-IBu 0.96 6.75e-09 1.64e-06
Smp_033930.1 SmLINC01462-IBu 0.92 1.18e-06 5.79e-05
Smp_033930.1 SmLINC01486-IBu 0.91 1.95e-06 8.25e-05
Smp_033930.1 SmLINC01637-IBu 0.88 1.23e-05 3.00e-04
Smp_033930.1 SmLINC03056-IBu 0.89 6.64e-06 1.00e-04
Smp_033930.1 SmLINC03362-IBu 0.83 1.00e-04 1.40e-03
Smp_033930.1 SmLINC03849-IBu 0.81 1.00e-04 2.20e-03
Smp_033930.1 SmLINC03930-IBu 0.80 2.00e-04 3.00e-03
Smp_033930.1 SmLINC04075-IBu 0.90 2.94e-06 1.00e-04
Smp_033930.1 SmLINC04106-IBu 0.88 1.07e-05 2.00e-04
Smp_033930.1 SmLINC04129-IBu 0.91 1.89e-06 8.09e-05
Smp_033930.1 SmLINC04144-IBu 0.83 9.71e-05 1.30e-03
Smp_033930.1 SmLINC04178-IBu 0.91 1.25e-06 6.04e-05
Smp_033930.1 SmLINC04271-IBu 0.93 2.72e-07 2.05e-05
Smp_033930.1 SmLINC04940-IBu 0.86 3.21e-05 6.00e-04
Smp_033930.1 SmLINC05178-IBu 0.89 4.96e-06 1.00e-04
Smp_033930.1 SmLINC05284-IBu 0.84 8.04e-05 1.20e-03
Smp_033930.1 SmLINC05716-IBu 0.86 3.71e-05 6.00e-04
Smp_033930.1 SmLINC05720-IBu 0.86 3.55e-05 6.00e-04
Smp_033930.1 SmLINC05840-IBu 0.94 1.19e-07 1.16e-05
Smp_033930.1 SmLINC05887-IBu 0.93 5.09e-07 3.18e-05
Smp_033930.1 SmLINC05888-IBu 0.87 2.19e-05 4.00e-04
Smp_033930.1 SmLINC06138-IBu 0.92 9.80e-07 5.06e-05
Smp_033930.1 SmLINC06210-IBu 0.81 1.00e-04 2.20e-03
Smp_033930.1 SmLINC06436-IBu 0.82 1.00e-04 1.90e-03
Smp_033930.1 SmLINC06535-IBu 0.84 8.14e-05 1.20e-03
Smp_033930.1 SmLINC06669-IBu 0.83 9.41e-05 1.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_033930.1 0 0.15 -3.24 -4.08 -3.67
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_125070.1 Smp_033930.1 0.94 6.30e-08 7.90e-06
Smp_176230.2 Smp_033930.1 0.90 2.61e-06 1.00e-04