Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_033250.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_033250.1 0 1.88 1.47 7.41 14.66

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033250.1 SmLINC04235-IBu 0.80 3.00e-04 3.20e-03
Smp_033250.1 SmLINC04627-IBu 0.80 2.00e-04 3.00e-03
Smp_033250.1 SmLINC06239-IBu 0.87 1.76e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03370-IBu 0 4.85 4.34 5.70 10.09
SmLINC04669-IBu 0 0.05 0.36 0.20 6.04
Smp_000280.1 0 0.28 -3.85 1.78 7.49
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000400.1 0 0.00 0.00 3.32 8.57
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_000430.1 0 2.49 3.10 2.37 9.46
Smp_011270.1 0 0.01 6.30 4.96 15.38
Smp_013540.1 0 0.90 0.25 0.92 6.94
Smp_014610.1 0 2.45 0.75 3.16 9.31
Smp_020540.1 0 -4.72 0.81 -4.72 4.67
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_041880.1 0 4.35 0.78 4.43 8.11
Smp_050270.1 0 0.23 -0.62 3.06 9.37
Smp_050750.1 0 0.03 1.31 3.80 9.53
Smp_054010.1 0 0.77 2.59 2.00 4.82
Smp_056700.1 0 -0.74 -1.75 0.30 4.19
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_076320.1 0 -0.05 1.14 4.78 9.81
Smp_077900.1 0 -0.17 -0.11 3.03 6.89
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_095350.1 0 0.76 -2.26 1.00 7.32
Smp_095980.1 0 2.98 -3.66 0.39 7.55
Smp_112450.1 0 -3.65 -3.65 -0.74 5.88
Smp_121070.1 0 -4.74 0.09 3.27 7.22
Smp_122280.1 0 0.00 0.00 4.72 8.48
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_131110.5 0 -4.13 -2.00 1.07 7.44
Smp_137360.1 0 0.00 2.23 6.21 9.69
Smp_138570.1 0 -1.57 -6.45 1.13 7.79
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_146480.1 0 0.00 0.00 4.08 8.10
Smp_151160.1 0 1.51 0.84 -0.56 5.60
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_165360.1 0 1.99 1.06 3.05 8.40
Smp_172010.1 0 1.31 -0.84 1.05 5.07
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_191910.1 0 -4.11 -4.11 6.38 13.11
Smp_199580.1 0 0.00 3.75 4.57 6.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033250.1 SmLINC03370-IBu 0.97 2.18e-10 1.92e-07
Smp_033250.1 SmLINC04669-IBu 0.99 1.64e-12 9.00e-09
Smp_000280.1 Smp_033250.1 0.99 5.15e-19 3.13e-13
Smp_000390.1 Smp_033250.1 0.94 6.37e-08 7.96e-06
Smp_000400.1 Smp_033250.1 0.98 6.02e-11 8.47e-08
Smp_000410.1 Smp_033250.1 0.99 7.11e-18 2.57e-12
Smp_000420.1 Smp_033250.1 0.99 4.25e-17 9.92e-12
Smp_000430.1 Smp_033250.1 0.99 2.73e-17 6.97e-12
Smp_011270.1 Smp_033250.1 0.93 3.77e-07 2.70e-05
Smp_033250.1 Smp_013540.1 0.99 5.51e-17 1.16e-11
Smp_014610.1 Smp_033250.1 0.99 1.58e-19 1.18e-13
Smp_020540.1 Smp_033250.1 0.94 7.17e-08 8.62e-06
Smp_041880.1 Smp_033250.1 0.93 3.37e-07 2.50e-05
Smp_050270.1 Smp_033250.1 0.99 2.50e-18 1.17e-12
Smp_050750.1 Smp_033250.1 0.99 9.17e-13 6.27e-09
Smp_054010.1 Smp_033250.1 0.93 4.07e-07 2.85e-05
Smp_056700.1 Smp_033250.1 0.95 3.16e-08 4.95e-06
Smp_058160.1 Smp_033250.1 0.98 5.46e-12 1.89e-08
Smp_076320.1 Smp_033250.1 0.92 1.06e-06 5.57e-05
Smp_077900.1 Smp_033250.1 0.99 6.07e-14 1.21e-09
Smp_077920.1 Smp_033250.1 0.99 9.32e-16 8.86e-11
Smp_033250.1 Smp_095350.1 0.92 1.04e-06 5.50e-05
Smp_033250.1 Smp_095980.1 0.98 4.83e-12 1.76e-08
Smp_112450.1 Smp_033250.1 0.92 5.75e-07 3.62e-05
Smp_121070.1 Smp_033250.1 0.93 3.09e-07 2.35e-05
Smp_122280.1 Smp_033250.1 0.92 8.17e-07 4.63e-05
Smp_130970.1 Smp_033250.1 0.90 2.80e-06 1.00e-04
Smp_131110.2 Smp_033250.1 0.98 1.62e-10 1.59e-07
Smp_131110.5 Smp_033250.1 0.98 5.55e-12 1.91e-08
Smp_033250.1 Smp_137360.1 0.97 1.07e-09 5.33e-07
Smp_138570.1 Smp_033250.1 0.99 1.69e-24 2.42e-18
Smp_144440.1 Smp_033250.1 0.97 5.15e-10 3.33e-07
Smp_146480.1 Smp_033250.1 0.98 2.30e-12 1.10e-08
Smp_151160.1 Smp_033250.1 0.97 7.75e-10 4.32e-07
Smp_155310.1 Smp_033250.1 0.99 1.12e-23 1.53e-17
Smp_155310.2 Smp_033250.1 0.99 7.62e-13 5.61e-09
Smp_165360.1 Smp_033250.1 0.99 1.65e-14 5.38e-10
Smp_172010.1 Smp_033250.1 0.99 2.19e-14 6.38e-10
Smp_175560.1 Smp_033250.1 0.99 4.18e-13 3.84e-09
Smp_191910.1 Smp_033250.1 0.99 6.26e-18 2.31e-12
Smp_199580.1 Smp_033250.1 0.92 7.89e-07 4.51e-05