Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_033050.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00026-IBu 0 1.41 -0.25 -3.45 -4.99
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
Smp_033050.2 0 0.00 -0.84 -2.77 -10.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033050.2 SmLINC00001-IBu -0.80 2.00e-04 3.00e-03
Smp_033050.2 SmLINC00004-IBu -0.81 2.00e-04 2.60e-03
Smp_033050.2 SmLINC00026-IBu 0.82 1.00e-04 1.80e-03
Smp_033050.2 SmLINC00037-IBu 0.81 2.00e-04 2.60e-03
Smp_033050.2 SmLINC01462-IBu 0.80 3.00e-04 3.30e-03
Smp_033050.2 SmLINC01637-IBu 0.87 1.77e-05 4.00e-04
Smp_033050.2 SmLINC04271-IBu 0.84 6.06e-05 9.00e-04
Smp_033050.2 SmLINC04421-IBu -0.80 2.00e-04 2.90e-03
Smp_033050.2 SmLINC05274-IBu 0.84 8.08e-05 1.20e-03
Smp_033050.2 SmLINC05284-IBu 0.89 8.04e-06 2.00e-04
Smp_033050.2 SmLINC05604-IBu -0.80 3.00e-04 3.20e-03
Smp_033050.2 SmLINC05720-IBu 0.82 1.00e-04 2.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01833-IBu 0 -0.11 -1.11 -4.31 -6.80
SmLINC02123-IBu 0 0.02 -1.07 -7.79 -7.29
SmLINC02987-IBu 0 0.03 -0.66 -5.30 -5.63
SmLINC02989-IBu 0 0.11 -1.19 -9.88 -6.33
SmLINC02990-IBu 0 0.11 -1.19 -9.88 -6.33
SmLINC02991-IBu 0 0.11 -1.19 -9.88 -6.33
SmLINC04965-IBu 0 0.16 -1.01 -3.32 -4.58
SmLINC06109-IBu 0 -0.15 -1.21 -4.51 -4.32
SmLINC06164-IBu 0 0.11 -0.61 -7.94 -5.65
SmLINC06962-IBu 0 -0.14 -1.06 -4.74 -5.63
Smp_002820.3 0 -0.31 -1.11 -4.63 -4.63
Smp_002920.1 0 0.04 -0.86 -3.56 -4.70
Smp_005260.1 0 0.06 -1.49 -4.55 -4.46
Smp_032480.1 0 -0.33 -0.97 -4.24 -4.52
Smp_033050.2 0 0.00 -0.84 -2.77 -10.32
Smp_064590.1 0 -0.47 -1.22 -6.85 -6.21
Smp_105910.1 0 -0.41 -0.91 -4.58 -4.76
Smp_129330.1 0 -0.37 -1.05 -3.94 -4.37
Smp_139510.1 0 -0.52 -1.09 -4.26 -4.37
Smp_155960.1 0 -0.73 -2.41 -7.35 -7.96
Smp_158310.1 0 -0.00 -0.69 -4.11 -5.43
Smp_160200.1 0 -0.04 -2.03 -4.28 -4.07
Smp_173180.1 0 -0.82 -1.51 -4.75 -6.15
Smp_175650.1 0 -0.56 -1.39 -4.37 -4.24
Smp_198650.1 0 -0.01 -1.08 -4.05 -4.59

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033050.2 SmLINC01833-IBu 0.90 4.21e-06 1.00e-04
Smp_033050.2 SmLINC02123-IBu 0.90 3.80e-06 1.00e-04
Smp_033050.2 SmLINC02987-IBu 0.95 2.32e-08 4.01e-06
Smp_033050.2 SmLINC02989-IBu 0.93 3.05e-07 2.33e-05
Smp_033050.2 SmLINC02990-IBu 0.93 3.05e-07 2.33e-05
Smp_033050.2 SmLINC02991-IBu 0.93 3.05e-07 2.33e-05
Smp_033050.2 SmLINC04965-IBu 0.90 4.23e-06 1.00e-04
Smp_033050.2 SmLINC06109-IBu 0.90 2.95e-06 1.00e-04
Smp_033050.2 SmLINC06164-IBu 0.93 2.96e-07 2.28e-05
Smp_033050.2 SmLINC06962-IBu 0.92 8.41e-07 4.72e-05
Smp_002820.3 Smp_033050.2 0.90 3.27e-06 1.00e-04
Smp_002920.1 Smp_033050.2 0.92 6.47e-07 3.93e-05
Smp_005260.1 Smp_033050.2 0.97 1.59e-09 6.87e-07
Smp_033050.2 Smp_032480.1 0.91 2.16e-06 9.20e-05
Smp_064590.1 Smp_033050.2 0.90 2.69e-06 1.00e-04
Smp_105910.1 Smp_033050.2 0.90 3.41e-06 1.00e-04
Smp_033050.2 Smp_129330.1 0.90 2.94e-06 1.00e-04
Smp_033050.2 Smp_139510.1 0.92 5.22e-07 3.38e-05
Smp_033050.2 Smp_155960.1 0.90 2.93e-06 1.00e-04
Smp_158310.1 Smp_033050.2 0.90 3.84e-06 1.00e-04
Smp_033050.2 Smp_160200.1 0.90 3.76e-06 1.00e-04
Smp_173180.1 Smp_033050.2 0.92 9.25e-07 5.05e-05
Smp_033050.2 Smp_175650.1 0.91 1.70e-06 7.77e-05
Smp_198650.1 Smp_033050.2 0.93 3.63e-07 2.63e-05