Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_033000.1 Data

Correlation between Smp_033000.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_033000.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
Smp_033000.1 0 -1.72 -11.37 -13.15 -11.62

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033000.1 SmLINC05989-IBu 0.83 1.00e-04 1.60e-03

Correlation between Smp_033000.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC01707-IBu 0 -1.39 -3.43 -3.89 -3.93
SmLINC04864-IBu 0 -1.31 -6.10 -2.71 -3.51
Smp_004230.1 0 -1.29 -9.36 -9.36 -9.36
Smp_026450.1 0 -1.24 -2.94 -5.88 -5.90
Smp_033000.1 0 -1.72 -11.37 -13.15 -11.62
Smp_037020.1 0 -2.12 -8.24 -8.43 -8.13
Smp_058360.2 0 -2.02 -6.41 -4.83 -10.18
Smp_060420.3 0 -1.56 -2.67 -4.56 -5.71
Smp_083180.1 0 -1.30 -10.31 -10.31 -10.31
Smp_100790.1 0 -1.29 -9.36 -9.36 -9.36
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_114740.1 0 -1.29 -9.36 -9.36 -9.36
Smp_119730.1 0 -2.59 -2.93 -5.18 -4.91
Smp_165180.1 0 -1.47 -9.43 -12.79 -7.00
Smp_190390.1 0 -1.86 -3.88 -4.81 -6.59
Smp_204400.1 0 -0.76 -1.09 -4.78 -5.38

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033000.1 SmLINC01707-IBu 0.92 8.42e-07 4.72e-05
Smp_033000.1 SmLINC04864-IBu 0.91 1.92e-06 8.46e-05
Smp_004230.1 Smp_033000.1 0.95 5.81e-08 7.47e-06
Smp_033000.1 Smp_026450.1 0.97 9.54e-10 4.94e-07
Smp_033000.1 Smp_037020.1 0.97 9.81e-10 5.03e-07
Smp_033000.1 Smp_058360.2 0.90 3.68e-06 1.00e-04
Smp_033000.1 Smp_060420.3 0.96 8.83e-09 2.10e-06
Smp_083180.1 Smp_033000.1 0.92 7.88e-07 4.51e-05
Smp_100790.1 Smp_033000.1 0.95 5.81e-08 7.47e-06
Smp_106390.1 Smp_033000.1 0.90 4.33e-06 1.00e-04
Smp_114740.1 Smp_033000.1 0.95 5.81e-08 7.47e-06
Smp_033000.1 Smp_119730.1 0.90 3.28e-06 1.00e-04
Smp_033000.1 Smp_165180.1 0.96 5.73e-09 1.58e-06
Smp_033000.1 Smp_190390.1 0.94 1.40e-07 1.36e-05
Smp_204400.1 Smp_033000.1 0.92 1.17e-06 5.98e-05