Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_032990.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032990.1 SmLINC03848-IBu 0.51 4.87e-02 1.09e-01
Smp_032990.1 SmLINC03849-IBu 0.60 1.67e-02 5.04e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032990.1 SmLINC06892-IBu 0.87 1.56e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_084400.4 0 -2.64 -4.06 -5.30 -7.16
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_116760.1 0 -1.93 -4.95 -12.63 -10.20
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_167350.1 0 -0.80 -1.92 -3.39 -6.34
Smp_179460.1 0 -2.52 -7.07 -4.09 -3.97
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_186130.2 0 -1.40 -3.75 -10.97 -9.77
Smp_186610.1 0 -3.09 -6.92 -6.26 -7.07
Smp_188600.1 0 -1.05 -3.54 -4.81 -5.04
Smp_190320.1 0 -2.26 -2.78 -8.01 -9.33
Smp_199840.1 0 -1.81 -3.67 -4.48 -5.82
Smp_201320.1 0 -1.71 -5.69 -7.19 -7.19
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_202540.1 0 -2.41 -1.38 -6.47 -8.50
Smp_206130.1 0 -1.65 -4.00 -5.51 -5.79
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032990.1 Smp_005860.3 0.93 2.15e-07 1.83e-05
Smp_061940.1 Smp_032990.1 0.91 2.21e-06 9.35e-05
Smp_065580.1 Smp_032990.1 0.90 2.54e-06 1.00e-04
Smp_066010.1 Smp_032990.1 0.93 2.85e-07 2.22e-05
Smp_084400.4 Smp_032990.1 0.92 1.01e-06 5.39e-05
Smp_113760.1 Smp_032990.1 0.91 1.62e-06 7.50e-05
Smp_116760.1 Smp_032990.1 0.94 1.75e-07 1.59e-05
Smp_140680.2 Smp_032990.1 0.93 4.00e-07 2.81e-05
Smp_167350.1 Smp_032990.1 0.90 2.74e-06 1.00e-04
Smp_032990.1 Smp_179460.1 0.94 1.78e-07 1.60e-05
Smp_032990.1 Smp_184460.1 0.92 1.05e-06 5.55e-05
Smp_185350.1 Smp_032990.1 0.96 1.12e-08 2.46e-06
Smp_186130.2 Smp_032990.1 0.94 1.27e-07 1.27e-05
Smp_032990.1 Smp_186610.1 0.95 5.74e-08 7.41e-06
Smp_188600.1 Smp_032990.1 0.99 1.59e-12 8.83e-09
Smp_190320.1 Smp_032990.1 0.95 1.60e-08 3.12e-06
Smp_032990.1 Smp_199840.1 0.97 4.42e-10 3.02e-07
Smp_201320.1 Smp_032990.1 0.90 3.83e-06 1.00e-04
Smp_202140.1 Smp_032990.1 0.94 6.97e-08 8.46e-06
Smp_202540.1 Smp_032990.1 0.91 2.21e-06 9.35e-05
Smp_206130.1 Smp_032990.1 0.93 3.84e-07 2.74e-05
Smp_206150.1 Smp_032990.1 0.96 3.13e-09 1.06e-06