Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_032980.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032980.1 SmLINC02678-IBu 0.80 2.00e-04 2.90e-03
Smp_032980.1 SmLINC04957-IBu 0.98 1.42e-11 3.10e-08
Smp_032980.1 SmLINC06128-IBu 0.89 8.08e-06 2.00e-04
Smp_032980.1 SmLINC06890-IBu 0.90 3.69e-06 1.00e-04
Smp_032980.1 SmLINC06903-IBu 0.88 1.21e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01775-IBu 0 -3.22 -3.99 -2.58 -9.36
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05095-IBu 0 -2.89 -9.14 -9.14 -9.14
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
Smp_000330.1 0 -3.46 -5.35 -5.35 -5.35
Smp_002510.1 0 -3.00 -2.99 -4.71 -4.29
Smp_005880.1 0 -1.71 -5.17 -4.43 -5.19
Smp_009650.1 0 -2.22 -4.12 -4.36 -3.86
Smp_010000.1 0 -1.51 -3.27 -4.59 -5.75
Smp_016730.1 0 -3.42 -4.55 -5.13 -5.31
Smp_020550.1 0 -3.71 -4.02 -4.24 -5.10
Smp_030500.1 0 -2.77 -6.42 -6.74 -6.44
Smp_032980.1 0 -3.49 -10.60 -12.19 -12.01
Smp_033400.1 0 -2.69 -7.71 -5.07 -4.27
Smp_034550.1 0 -2.91 -5.29 -2.60 -4.93
Smp_035270.2 0 -2.51 -3.90 -3.56 -3.15
Smp_036250.1 0 -3.24 -3.82 -4.15 -3.72
Smp_038100.1 0 -2.11 -3.55 -4.08 -3.42
Smp_038530.1 0 -2.20 -4.62 -4.98 -6.68
Smp_055770.1 0 -5.16 -5.96 -12.28 -12.28
Smp_057790.1 0 -3.82 -7.29 -4.86 -7.43
Smp_061870.1 0 -2.53 -4.47 -5.29 -5.38
Smp_063090.1 0 -2.16 -4.16 -3.57 -3.93
Smp_071390.1 0 -3.12 -4.67 -2.84 -3.82
Smp_076010.1 0 -2.03 -5.17 -3.81 -3.82
Smp_079220.1 0 -2.48 -4.55 -6.52 -5.99
Smp_079920.1 0 -2.43 -3.90 -3.20 -3.57
Smp_079970.1 0 -3.36 -6.77 -9.16 -12.28
Smp_083720.1 0 -2.37 -5.50 -6.31 -5.77
Smp_087250.1 0 -2.06 -5.90 -3.94 -5.02
Smp_092320.1 0 -1.82 -3.08 -5.42 -5.28
Smp_099670.1 0 -3.51 -4.19 -5.26 -6.78
Smp_099680.1 0 -3.17 -4.14 -4.93 -7.18
Smp_112480.1 0 -3.87 -4.82 -3.33 -2.83
Smp_124340.1 0 -2.62 -4.99 -7.42 -3.75
Smp_129610.1 0 -3.45 -4.74 -3.50 -3.64
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_136240.9 0 -3.09 -3.16 -4.37 -6.52
Smp_137520.1 0 -2.84 -5.66 -3.12 -4.79
Smp_140270.1 0 -2.83 -3.04 -4.31 -3.33
Smp_145340.1 0 -2.62 -9.51 -6.28 -7.06
Smp_152260.1 0 -3.17 -4.39 -4.03 -4.71
Smp_152780.1 0 -4.06 -8.92 -8.72 -11.55
Smp_153600.1 0 -2.66 -5.24 -5.88 -4.89
Smp_154370.1 0 -2.82 -7.17 -3.52 -2.90
Smp_155890.1 0 -3.01 -4.45 -2.70 -3.71
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_174560.1 0 -1.74 -2.28 -5.34 -5.48
Smp_175190.1 0 -3.40 -5.32 -6.00 -5.17
Smp_179640.1 0 -2.62 -9.51 -6.28 -7.06
Smp_183420.1 0 -2.62 -9.51 -6.28 -7.06
Smp_194770.1 0 -2.35 -7.85 -7.77 -7.92
Smp_195140.1 0 -1.78 -5.21 -6.28 -8.26
Smp_196050.1 0 -3.12 -5.35 -6.02 -6.99
Smp_197110.1 0 -1.94 -2.50 -4.24 -4.44
Smp_204770.1 0 -2.64 -6.46 -5.44 -5.13
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032980.1 SmLINC01775-IBu 0.92 1.03e-06 5.46e-05
Smp_032980.1 SmLINC04957-IBu 0.98 1.42e-11 3.42e-08
Smp_032980.1 SmLINC05095-IBu 0.90 3.94e-06 1.00e-04
Smp_032980.1 SmLINC06890-IBu 0.90 3.69e-06 1.00e-04
Smp_032980.1 Smp_000330.1 0.94 1.71e-07 1.56e-05
Smp_032980.1 Smp_002510.1 0.94 6.83e-08 8.34e-06
Smp_032980.1 Smp_005880.1 0.91 1.24e-06 6.22e-05
Smp_032980.1 Smp_009650.1 0.95 4.28e-08 6.08e-06
Smp_010000.1 Smp_032980.1 0.90 4.51e-06 1.00e-04
Smp_032980.1 Smp_016730.1 0.96 6.60e-09 1.73e-06
Smp_032980.1 Smp_020550.1 0.92 6.06e-07 3.75e-05
Smp_030500.1 Smp_032980.1 0.93 2.40e-07 1.97e-05
Smp_033400.1 Smp_032980.1 0.98 1.42e-10 1.45e-07
Smp_032980.1 Smp_034550.1 0.92 1.18e-06 6.00e-05
Smp_032980.1 Smp_035270.2 0.98 9.62e-11 1.13e-07
Smp_032980.1 Smp_036250.1 0.95 2.79e-08 4.55e-06
Smp_032980.1 Smp_038100.1 0.93 2.62e-07 2.09e-05
Smp_032980.1 Smp_038530.1 0.93 2.11e-07 1.80e-05
Smp_032980.1 Smp_055770.1 0.93 3.00e-07 2.30e-05
Smp_032980.1 Smp_057790.1 0.91 2.20e-06 9.31e-05
Smp_032980.1 Smp_061870.1 0.91 2.34e-06 9.73e-05
Smp_032980.1 Smp_063090.1 0.96 1.38e-08 2.84e-06
Smp_032980.1 Smp_071390.1 0.94 6.56e-08 8.12e-06
Smp_032980.1 Smp_076010.1 0.95 1.83e-08 3.42e-06
Smp_032980.1 Smp_079220.1 0.91 1.91e-06 8.42e-05
Smp_032980.1 Smp_079920.1 0.95 2.67e-08 4.41e-06
Smp_032980.1 Smp_079970.1 0.95 1.66e-08 3.21e-06
Smp_032980.1 Smp_083720.1 0.95 1.74e-08 3.31e-06
Smp_032980.1 Smp_087250.1 0.90 3.41e-06 1.00e-04
Smp_032980.1 Smp_092320.1 0.91 1.63e-06 7.55e-05
Smp_032980.1 Smp_099670.1 0.94 7.33e-08 8.76e-06
Smp_032980.1 Smp_099680.1 0.90 2.87e-06 1.00e-04
Smp_032980.1 Smp_112480.1 0.91 1.37e-06 6.68e-05
Smp_032980.1 Smp_124340.1 0.90 3.97e-06 1.00e-04
Smp_129610.1 Smp_032980.1 0.94 9.73e-08 1.06e-05
Smp_032980.1 Smp_134410.1 0.91 1.65e-06 7.61e-05
Smp_032980.1 Smp_136240.9 0.92 1.06e-06 5.56e-05
Smp_032980.1 Smp_137520.1 0.93 3.67e-07 2.65e-05
Smp_032980.1 Smp_140270.1 0.90 3.62e-06 1.00e-04
Smp_032980.1 Smp_145340.1 0.91 2.23e-06 9.41e-05
Smp_152260.1 Smp_032980.1 0.92 7.17e-07 4.22e-05
Smp_032980.1 Smp_152780.1 0.96 6.63e-09 1.74e-06
Smp_032980.1 Smp_153600.1 0.97 1.66e-09 7.05e-07
Smp_032980.1 Smp_154370.1 0.93 1.99e-07 1.73e-05
Smp_032980.1 Smp_155890.1 0.91 1.80e-06 8.08e-05
Smp_032980.1 Smp_169190.1 0.91 2.30e-06 9.60e-05
Smp_032980.1 Smp_174560.1 0.90 4.58e-06 1.00e-04
Smp_032980.1 Smp_175190.1 0.96 6.16e-09 1.65e-06
Smp_032980.1 Smp_179640.1 0.91 2.23e-06 9.41e-05
Smp_032980.1 Smp_183420.1 0.91 2.23e-06 9.41e-05
Smp_032980.1 Smp_194770.1 0.95 2.74e-08 4.49e-06
Smp_032980.1 Smp_195140.1 0.95 5.46e-08 7.17e-06
Smp_032980.1 Smp_196050.1 0.94 7.21e-08 8.66e-06
Smp_032980.1 Smp_197110.1 0.92 7.84e-07 4.50e-05
Smp_032980.1 Smp_204770.1 0.97 1.42e-09 6.39e-07
Smp_032980.1 Smp_206200.1 0.91 1.44e-06 6.90e-05