Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_032950.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_032950.1 0 1.09 -1.91 3.43 3.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032950.1 SmLINC00369-IBu 0.91 1.98e-06 8.34e-05
Smp_032950.1 SmLINC00477-IBu 0.87 1.61e-05 3.00e-04
Smp_032950.1 SmLINC00484-IBu 0.90 4.06e-06 1.00e-04
Smp_032950.1 SmLINC00525-IBu 0.83 1.00e-04 1.60e-03
Smp_032950.1 SmLINC00548-IBu 0.87 2.09e-05 4.00e-04
Smp_032950.1 SmLINC00633-IBu 0.93 4.31e-07 2.83e-05
Smp_032950.1 SmLINC01084-IBu 0.85 4.71e-05 8.00e-04
Smp_032950.1 SmLINC01122-IBu 0.93 2.26e-07 1.81e-05
Smp_032950.1 SmLINC01139-IBu 0.90 4.25e-06 1.00e-04
Smp_032950.1 SmLINC01171-IBu 0.83 9.02e-05 1.30e-03
Smp_032950.1 SmLINC01431-IBu 0.88 1.21e-05 3.00e-04
Smp_032950.1 SmLINC01432-IBu 0.82 1.00e-04 2.00e-03
Smp_032950.1 SmLINC01433-IBu 0.84 8.43e-05 1.20e-03
Smp_032950.1 SmLINC01435-IBu 0.89 5.45e-06 1.00e-04
Smp_032950.1 SmLINC01538-IBu 0.92 7.76e-07 4.29e-05
Smp_032950.1 SmLINC01569-IBu 0.94 1.70e-07 1.48e-05
Smp_032950.1 SmLINC01733-IBu 0.90 4.14e-06 1.00e-04
Smp_032950.1 SmLINC01746-IBu 0.87 2.36e-05 4.00e-04
Smp_032950.1 SmLINC01822-IBu 0.81 2.00e-04 2.60e-03
Smp_032950.1 SmLINC02084-IBu 0.83 9.21e-05 1.30e-03
Smp_032950.1 SmLINC02546-IBu 0.80 3.00e-04 3.20e-03
Smp_032950.1 SmLINC03309-IBu 0.91 2.28e-06 9.22e-05
Smp_032950.1 SmLINC03542-IBu 0.90 4.19e-06 1.00e-04
Smp_032950.1 SmLINC03693-IBu 0.87 1.55e-05 3.00e-04
Smp_032950.1 SmLINC04054-IBu 0.81 2.00e-04 2.50e-03
Smp_032950.1 SmLINC04345-IBu 0.84 7.92e-05 1.10e-03
Smp_032950.1 SmLINC04421-IBu 0.82 1.00e-04 1.90e-03
Smp_032950.1 SmLINC04478-IBu 0.94 7.65e-08 8.54e-06
Smp_032950.1 SmLINC04521-IBu 0.96 2.34e-09 8.18e-07
Smp_032950.1 SmLINC04663-IBu 0.89 4.91e-06 1.00e-04
Smp_032950.1 SmLINC05147-IBu 0.89 5.14e-06 1.00e-04
Smp_032950.1 SmLINC05171-IBu 0.81 2.00e-04 2.40e-03
Smp_032950.1 SmLINC05258-IBu 0.85 5.35e-05 8.00e-04
Smp_032950.1 SmLINC06024-IBu 0.81 1.00e-04 2.20e-03
Smp_032950.1 SmLINC06145-IBu 0.90 2.88e-06 1.00e-04
Smp_032950.1 SmLINC06221-IBu 0.86 3.17e-05 6.00e-04
Smp_032950.1 SmLINC06444-IBu 0.86 2.71e-05 5.00e-04
Smp_032950.1 SmLINC06449-IBu 0.86 2.99e-05 5.00e-04
Smp_032950.1 SmLINC06536-IBu 0.81 2.00e-04 2.50e-03
Smp_032950.1 SmLINC06537-IBu 0.82 1.00e-04 2.00e-03
Smp_032950.1 SmLINC06543-IBu 0.88 1.14e-05 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_032950.1 0 1.09 -1.91 3.43 3.43
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_205270.1 0 0.71 -0.40 10.02 9.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031040.1 Smp_032950.1 0.93 3.28e-07 2.45e-05
Smp_032950.1 Smp_040970.2 0.91 1.46e-06 6.99e-05
Smp_058140.3 Smp_032950.1 0.91 1.24e-06 6.23e-05
Smp_032950.1 Smp_079420.1 0.91 2.44e-06 1.00e-04
Smp_081920.1 Smp_032950.1 0.92 5.79e-07 3.64e-05
Smp_032950.1 Smp_082580.1 0.91 1.88e-06 8.35e-05
Smp_032950.1 Smp_123550.1 0.93 4.92e-07 3.25e-05
Smp_032950.1 Smp_131840.1 0.90 3.71e-06 1.00e-04
Smp_141680.1 Smp_032950.1 0.90 3.58e-06 1.00e-04
Smp_150980.2 Smp_032950.1 0.91 1.29e-06 6.41e-05
Smp_151120.1 Smp_032950.1 0.92 7.39e-07 4.31e-05
Smp_032950.1 Smp_154180.1 0.90 3.78e-06 1.00e-04
Smp_154190.1 Smp_032950.1 0.90 2.82e-06 1.00e-04
Smp_159070.2 Smp_032950.1 0.96 1.16e-08 2.52e-06
Smp_166860.1 Smp_032950.1 0.92 7.71e-07 4.44e-05
Smp_172480.1 Smp_032950.1 0.94 1.02e-07 1.10e-05
Smp_032950.1 Smp_172960.1 0.91 1.29e-06 6.41e-05
Smp_194860.1 Smp_032950.1 0.91 1.60e-06 7.45e-05
Smp_194960.1 Smp_032950.1 0.90 3.57e-06 1.00e-04
Smp_203090.1 Smp_032950.1 0.95 5.13e-08 6.87e-06
Smp_032950.1 Smp_205270.1 0.94 1.03e-07 1.10e-05