Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_032740.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
Smp_032740.1 0 2.87 3.50 0.35 -1.77

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032740.1 SmLINC04430-IBu 0.59 1.99e-02 5.72e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
Smp_032740.1 0 2.87 3.50 0.35 -1.77

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032740.1 SmLINC02646-IBu 0.87 1.66e-05 3.00e-04
Smp_032740.1 SmLINC06646-IBu 0.92 8.63e-07 4.62e-05
Smp_032740.1 SmLINC06700-IBu 0.81 1.00e-04 2.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_024140.1 0 0.15 -0.05 -5.68 -10.99
Smp_032740.1 0 2.87 3.50 0.35 -1.77
Smp_033950.3 0 10.15 11.01 9.52 8.41
Smp_040970.3 0 11.70 13.01 5.20 8.78
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_099160.4 0 11.96 13.30 11.03 12.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032740.1 Smp_017650.1 0.95 4.78e-08 6.55e-06
Smp_032740.1 Smp_021340.3 0.95 4.07e-08 5.88e-06
Smp_032740.1 Smp_024140.1 0.90 3.55e-06 1.00e-04
Smp_033950.3 Smp_032740.1 0.94 1.16e-07 1.20e-05
Smp_040970.3 Smp_032740.1 0.90 2.52e-06 1.00e-04
Smp_062610.2 Smp_032740.1 0.90 3.59e-06 1.00e-04
Smp_032740.1 Smp_083380.2 0.90 2.79e-06 1.00e-04
Smp_032740.1 Smp_099160.4 0.93 2.87e-07 2.23e-05