Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_032580.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_032580.2 0 2.38 3.91 5.63 6.44

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032580.2 SmLINC00001-IBu 0.82 1.00e-04 2.10e-03
Smp_032580.2 SmLINC00004-IBu 0.84 6.70e-05 1.00e-03
Smp_032580.2 SmLINC00282-IBu -0.83 9.14e-05 1.30e-03
Smp_032580.2 SmLINC00376-IBu 0.80 2.00e-04 2.90e-03
Smp_032580.2 SmLINC00525-IBu 0.80 2.00e-04 3.00e-03
Smp_032580.2 SmLINC01084-IBu 0.82 1.00e-04 2.00e-03
Smp_032580.2 SmLINC01431-IBu 0.83 9.22e-05 1.30e-03
Smp_032580.2 SmLINC01432-IBu 0.83 1.00e-04 1.40e-03
Smp_032580.2 SmLINC01637-IBu -0.81 1.00e-04 2.20e-03
Smp_032580.2 SmLINC01733-IBu 0.81 1.00e-04 2.30e-03
Smp_032580.2 SmLINC02255-IBu -0.93 2.16e-07 1.75e-05
Smp_032580.2 SmLINC02630-IBu -0.90 3.76e-06 1.00e-04
Smp_032580.2 SmLINC02657-IBu -0.91 1.72e-06 7.56e-05
Smp_032580.2 SmLINC03849-IBu -0.82 1.00e-04 2.10e-03
Smp_032580.2 SmLINC04421-IBu 0.87 1.67e-05 3.00e-04
Smp_032580.2 SmLINC04423-IBu 0.87 1.77e-05 4.00e-04
Smp_032580.2 SmLINC04478-IBu 0.81 1.00e-04 2.20e-03
Smp_032580.2 SmLINC04521-IBu 0.81 1.00e-04 2.20e-03
Smp_032580.2 SmLINC05147-IBu 0.82 1.00e-04 2.10e-03
Smp_032580.2 SmLINC05284-IBu -0.88 1.45e-05 3.00e-04
Smp_032580.2 SmLINC05604-IBu 0.83 9.02e-05 1.30e-03
Smp_032580.2 SmLINC06024-IBu 0.83 1.00e-04 1.50e-03
Smp_032580.2 SmLINC06415-IBu 0.84 7.91e-05 1.10e-03
Smp_032580.2 SmLINC06535-IBu -0.90 3.85e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032580.2 0 2.38 3.91 5.63 6.44
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_050350.3 Smp_032580.2 0.91 2.40e-06 9.91e-05
Smp_052280.2 Smp_032580.2 0.90 2.52e-06 1.00e-04
Smp_137000.2 Smp_032580.2 0.90 4.04e-06 1.00e-04
Smp_160230.1 Smp_032580.2 -0.90 4.77e-06 1.00e-04