Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_032320.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_032320.2 0 -0.17 0.68 -9.42 -9.42

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032320.2 SmLINC00372-IBu 0.88 1.17e-05 2.00e-04
Smp_032320.2 SmLINC01316-IBu 0.89 7.72e-06 2.00e-04
Smp_032320.2 SmLINC02646-IBu 0.90 2.94e-06 1.00e-04
Smp_032320.2 SmLINC06646-IBu 0.91 2.08e-06 8.65e-05
Smp_032320.2 SmLINC06700-IBu 0.92 7.90e-07 4.34e-05
Smp_032320.2 SmLINC06836-IBu 0.86 2.64e-05 5.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_032320.2 0 -0.17 0.68 -9.42 -9.42
Smp_033950.3 0 10.15 11.01 9.52 8.41
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_040970.3 0 11.70 13.01 5.20 8.78
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_103540.1 0 11.43 12.63 8.84 9.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032320.2 Smp_017650.1 0.97 2.76e-10 2.23e-07
Smp_032320.2 Smp_021340.3 0.96 2.57e-09 9.37e-07
Smp_032320.2 Smp_032120.1 0.92 8.36e-07 4.70e-05
Smp_033950.3 Smp_032320.2 0.91 2.03e-06 8.81e-05
Smp_032320.2 Smp_034840.1 0.91 2.46e-06 1.00e-04
Smp_032320.2 Smp_036270.3 0.90 3.20e-06 1.00e-04
Smp_040970.3 Smp_032320.2 0.94 1.48e-07 1.41e-05
Smp_032320.2 Smp_059340.3 0.94 1.31e-07 1.30e-05
Smp_032320.2 Smp_062070.1 0.91 2.12e-06 9.06e-05
Smp_062610.2 Smp_032320.2 0.96 5.24e-09 1.49e-06
Smp_032320.2 Smp_083380.2 0.93 3.30e-07 2.46e-05
Smp_032320.2 Smp_084940.2 0.93 5.08e-07 3.32e-05
Smp_032320.2 Smp_098370.1 0.96 9.63e-09 2.22e-06
Smp_032320.2 Smp_099160.4 0.96 3.55e-09 1.15e-06
Smp_103540.1 Smp_032320.2 0.93 3.37e-07 2.50e-05