Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_032320.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05888-IBu 0 4.50 1.82 -0.36 -2.39
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032320.1 SmLINC00037-IBu 0.88 1.03e-05 2.00e-04
Smp_032320.1 SmLINC00133-IBu 0.88 1.47e-05 3.00e-04
Smp_032320.1 SmLINC00282-IBu 0.88 1.28e-05 3.00e-04
Smp_032320.1 SmLINC00784-IBu 0.94 1.01e-07 1.04e-05
Smp_032320.1 SmLINC00893-IBu 0.81 2.00e-04 2.40e-03
Smp_032320.1 SmLINC01462-IBu 0.85 4.31e-05 7.00e-04
Smp_032320.1 SmLINC01486-IBu 0.85 5.91e-05 9.00e-04
Smp_032320.1 SmLINC01637-IBu 0.86 3.39e-05 6.00e-04
Smp_032320.1 SmLINC03056-IBu 0.94 1.17e-07 1.14e-05
Smp_032320.1 SmLINC03362-IBu 0.91 1.65e-06 7.33e-05
Smp_032320.1 SmLINC03848-IBu 0.93 4.19e-07 2.78e-05
Smp_032320.1 SmLINC03930-IBu 0.84 6.89e-05 1.00e-03
Smp_032320.1 SmLINC04075-IBu 0.82 1.00e-04 2.10e-03
Smp_032320.1 SmLINC04106-IBu 0.89 5.12e-06 1.00e-04
Smp_032320.1 SmLINC04366-IBu 0.92 7.07e-07 4.01e-05
Smp_032320.1 SmLINC04940-IBu 0.80 2.00e-04 2.90e-03
Smp_032320.1 SmLINC05284-IBu 0.81 2.00e-04 2.40e-03
Smp_032320.1 SmLINC05716-IBu 0.87 1.73e-05 3.00e-04
Smp_032320.1 SmLINC05720-IBu 0.81 2.00e-04 2.50e-03
Smp_032320.1 SmLINC05888-IBu 0.80 2.00e-04 3.10e-03
Smp_032320.1 SmLINC06210-IBu 0.90 3.19e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00050-IBu 0 0.53 -1.98 -4.97 -3.48
SmLINC00092-IBu 0 0.40 -3.56 -10.98 -7.43
SmLINC00763-IBu 0 0.29 -12.05 -6.81 -12.05
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01514-IBu 0 0.13 -4.13 -5.01 -2.59
SmLINC01725-IBu 0 1.14 -1.23 -3.05 -5.30
SmLINC01954-IBu 0 -0.14 -2.96 -4.06 -3.25
SmLINC02220-IBu 0 1.37 -1.17 -3.21 -3.83
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03565-IBu 0 0.98 -1.34 -4.00 -5.34
SmLINC03663-IBu 0 0.69 -1.37 -3.57 -4.79
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03897-IBu 0 0.23 -1.59 -3.45 -4.44
SmLINC03980-IBu 0 0.74 -9.43 -9.40 -9.93
SmLINC03994-IBu 0 0.17 -2.19 -4.62 -5.34
SmLINC04147-IBu 0 0.60 -1.27 -3.78 -3.31
SmLINC04303-IBu 0 1.06 -1.38 -3.42 -4.74
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05497-IBu 0 1.15 -0.56 -3.36 -4.36
SmLINC05583-IBu 0 1.72 -1.06 -2.74 -3.52
SmLINC05663-IBu 0 0.72 -2.30 -7.21 -6.28
SmLINC05908-IBu 0 4.74 -1.08 -2.12 -1.94
SmLINC05925-IBu 0 0.44 -1.21 -1.73 -5.30
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06424-IBu 0 0.67 -0.98 -3.65 -4.75
SmLINC06551-IBu 0 0.64 -1.60 -2.60 -6.93
SmLINC06717-IBu 0 0.99 -8.80 -8.80 -8.80
SmLINC06888-IBu 0 1.74 -1.97 -6.03 -4.97
Smp_019000.1 0 2.12 -4.51 -7.54 -7.54
Smp_020840.1 0 0.75 -4.50 -3.36 -3.70
Smp_021330.1 0 0.03 -9.72 -5.60 -5.99
Smp_026160.2 0 0.93 -2.82 -7.30 -8.39
Smp_030010.1 0 0.62 -6.53 -3.86 -5.21
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_038560.1 0 0.43 -3.62 -2.65 -4.65
Smp_049250.1 0 1.49 -2.10 -4.41 -4.17
Smp_049300.2 0 0.52 -2.77 -4.62 -5.61
Smp_049300.4 0 1.54 -4.40 -4.53 -7.24
Smp_080920.1 0 1.28 -1.93 -2.08 -3.64
Smp_082430.1 0 0.56 -9.20 -5.69 -4.14
Smp_089860.1 0 4.05 -0.23 -9.08 -5.43
Smp_094680.1 0 1.98 -4.03 -4.17 -3.96
Smp_110400.1 0 0.09 -0.79 -8.02 -8.98
Smp_111340.6 0 0.97 -0.72 -7.78 -9.70
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_113310.1 0 1.47 -2.62 -5.78 -7.51
Smp_117620.1 0 0.28 -4.02 -5.77 -6.24
Smp_123100.1 0 1.03 -1.57 -3.15 -3.94
Smp_124140.1 0 2.40 0.33 -1.66 -2.77
Smp_125140.1 0 -0.33 -4.66 -7.65 -4.46
Smp_136600.1 0 0.07 -2.48 -5.77 -7.33
Smp_147530.1 0 2.28 -0.50 -3.10 -5.24
Smp_150070.1 0 0.81 -2.65 -7.50 -9.92
Smp_159610.1 0 2.56 -4.50 -4.50 -6.59
Smp_171360.1 0 3.13 -2.66 -4.89 -4.89
Smp_178170.1 0 1.66 -1.97 -7.62 -7.62
Smp_182940.1 0 4.10 -0.33 -4.76 -4.76
Smp_183080.1 0 1.61 -2.18 -8.70 -8.70
Smp_183570.1 0 0.44 -6.32 -6.32 -6.32
Smp_184400.1 0 0.15 -4.14 -8.88 -8.88
Smp_184860.1 0 2.74 -0.82 -5.81 -5.81
Smp_185560.1 0 0.07 -2.33 -8.32 -8.32
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_186020.1 0 0.85 -2.69 -7.72 -7.80
Smp_189120.1 0 3.83 -0.95 -5.44 -3.13
Smp_196700.1 0 0.04 -8.78 -6.55 -6.98
Smp_200010.1 0 6.19 -0.25 -7.50 -5.12
Smp_200470.1 0 1.40 -2.54 -7.67 -7.67
Smp_200900.1 0 1.23 -4.76 -2.64 -1.93
Smp_201790.1 0 4.46 -3.38 -3.38 -3.38
Smp_201930.1 0 1.32 -0.08 -4.89 -5.07
Smp_202490.1 0 0.07 -2.34 -9.58 -9.58
Smp_202670.1 0 2.19 -3.90 -5.33 -5.33
Smp_203920.1 0 0.58 -2.39 -6.11 -7.08
Smp_204650.1 0 7.45 2.61 0.00 2.29
Smp_204660.1 0 1.01 -4.53 -7.96 -8.16
Smp_205120.1 0 2.69 -1.75 -5.80 -7.84
Smp_205460.1 0 0.98 -3.11 -8.72 -8.72
Smp_205780.1 0 1.12 -3.78 -8.26 -8.26

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032320.1 SmLINC00050-IBu 0.90 2.90e-06 1.00e-04
Smp_032320.1 SmLINC00092-IBu 0.97 1.94e-10 1.78e-07
Smp_032320.1 SmLINC00763-IBu 0.95 1.64e-08 3.19e-06
Smp_032320.1 SmLINC00784-IBu 0.94 1.01e-07 1.09e-05
Smp_032320.1 SmLINC01514-IBu 0.90 3.71e-06 1.00e-04
Smp_032320.1 SmLINC01725-IBu 0.93 2.73e-07 2.16e-05
Smp_032320.1 SmLINC01954-IBu 0.92 6.08e-07 3.76e-05
Smp_032320.1 SmLINC02220-IBu 0.91 1.97e-06 8.62e-05
Smp_032320.1 SmLINC03056-IBu 0.94 1.17e-07 1.20e-05
Smp_032320.1 SmLINC03362-IBu 0.91 1.65e-06 7.60e-05
Smp_032320.1 SmLINC03565-IBu 0.90 3.52e-06 1.00e-04
Smp_032320.1 SmLINC03663-IBu 0.90 3.17e-06 1.00e-04
Smp_032320.1 SmLINC03848-IBu 0.93 4.19e-07 2.90e-05
Smp_032320.1 SmLINC03897-IBu 0.90 4.60e-06 1.00e-04
Smp_032320.1 SmLINC03980-IBu 0.96 4.10e-09 1.27e-06
Smp_032320.1 SmLINC03994-IBu 0.92 1.09e-06 5.69e-05
Smp_032320.1 SmLINC04147-IBu 0.92 6.04e-07 3.75e-05
Smp_032320.1 SmLINC04303-IBu 0.91 1.98e-06 8.65e-05
Smp_032320.1 SmLINC04366-IBu 0.92 7.07e-07 4.18e-05
Smp_032320.1 SmLINC05497-IBu 0.92 1.16e-06 5.94e-05
Smp_032320.1 SmLINC05583-IBu 0.94 1.36e-07 1.33e-05
Smp_032320.1 SmLINC05663-IBu 0.92 5.61e-07 3.56e-05
Smp_032320.1 SmLINC05908-IBu 0.91 1.90e-06 8.39e-05
Smp_032320.1 SmLINC05925-IBu 0.91 2.11e-06 9.05e-05
Smp_032320.1 SmLINC06210-IBu 0.90 3.19e-06 1.00e-04
Smp_032320.1 SmLINC06424-IBu 0.91 1.78e-06 8.01e-05
Smp_032320.1 SmLINC06551-IBu 0.90 3.88e-06 1.00e-04
Smp_032320.1 SmLINC06717-IBu 0.93 2.65e-07 2.11e-05
Smp_032320.1 SmLINC06888-IBu 0.92 7.02e-07 4.16e-05
Smp_032320.1 Smp_019000.1 0.94 6.70e-08 8.24e-06
Smp_032320.1 Smp_020840.1 0.92 6.37e-07 3.89e-05
Smp_021330.1 Smp_032320.1 0.91 1.23e-06 6.17e-05
Smp_026160.2 Smp_032320.1 0.91 1.20e-06 6.08e-05
Smp_032320.1 Smp_030010.1 0.91 1.76e-06 7.97e-05
Smp_032320.1 Smp_038560.1 0.93 2.30e-07 1.92e-05
Smp_049250.1 Smp_032320.1 0.97 6.92e-10 4.02e-07
Smp_032320.1 Smp_049300.2 0.94 7.99e-08 9.28e-06
Smp_032320.1 Smp_049300.4 0.95 4.15e-08 5.95e-06
Smp_032320.1 Smp_080920.1 0.92 5.84e-07 3.66e-05
Smp_032320.1 Smp_082430.1 0.94 1.73e-07 1.58e-05
Smp_089860.1 Smp_032320.1 0.90 3.38e-06 1.00e-04
Smp_032320.1 Smp_094680.1 0.91 1.72e-06 7.83e-05
Smp_032320.1 Smp_110400.1 0.92 8.69e-07 4.83e-05
Smp_111340.6 Smp_032320.1 0.93 4.57e-07 3.08e-05
Smp_112090.1 Smp_032320.1 0.96 8.08e-09 1.98e-06
Smp_113310.1 Smp_032320.1 0.92 5.28e-07 3.41e-05
Smp_032320.1 Smp_117620.1 0.94 6.88e-08 8.39e-06
Smp_032320.1 Smp_123100.1 0.93 2.51e-07 2.04e-05
Smp_124140.1 Smp_032320.1 0.91 1.30e-06 6.45e-05
Smp_125140.1 Smp_032320.1 0.92 1.02e-06 5.43e-05
Smp_032320.1 Smp_136600.1 0.91 1.22e-06 6.17e-05
Smp_147530.1 Smp_032320.1 0.91 1.53e-06 7.23e-05
Smp_150070.1 Smp_032320.1 0.95 5.97e-08 7.61e-06
Smp_159610.1 Smp_032320.1 0.91 1.23e-06 6.21e-05
Smp_032320.1 Smp_171360.1 0.92 7.52e-07 4.36e-05
Smp_032320.1 Smp_178170.1 0.94 6.33e-08 7.92e-06
Smp_182940.1 Smp_032320.1 0.90 4.34e-06 1.00e-04
Smp_032320.1 Smp_183080.1 0.90 4.67e-06 1.00e-04
Smp_183570.1 Smp_032320.1 0.90 3.73e-06 1.00e-04
Smp_032320.1 Smp_184400.1 0.91 1.90e-06 8.40e-05
Smp_032320.1 Smp_184860.1 0.93 5.00e-07 3.28e-05
Smp_185560.1 Smp_032320.1 0.91 2.10e-06 9.02e-05
Smp_185680.1 Smp_032320.1 0.91 2.02e-06 8.77e-05
Smp_185830.1 Smp_032320.1 0.92 1.09e-06 5.67e-05
Smp_032320.1 Smp_186020.1 0.95 5.90e-08 7.55e-06
Smp_189120.1 Smp_032320.1 0.94 1.78e-07 1.61e-05
Smp_032320.1 Smp_196700.1 0.90 2.77e-06 1.00e-04
Smp_032320.1 Smp_200010.1 0.92 6.57e-07 3.97e-05
Smp_032320.1 Smp_200470.1 0.96 9.42e-09 2.19e-06
Smp_032320.1 Smp_200900.1 0.97 3.65e-10 2.67e-07
Smp_032320.1 Smp_201790.1 0.92 8.03e-07 4.57e-05
Smp_032320.1 Smp_201930.1 0.96 9.24e-09 2.16e-06
Smp_202490.1 Smp_032320.1 0.90 2.57e-06 1.00e-04
Smp_032320.1 Smp_202670.1 0.94 1.90e-07 1.68e-05
Smp_203920.1 Smp_032320.1 0.93 4.91e-07 3.24e-05
Smp_032320.1 Smp_204650.1 0.90 3.66e-06 1.00e-04
Smp_032320.1 Smp_204660.1 0.94 1.83e-07 1.64e-05
Smp_032320.1 Smp_205120.1 0.94 9.68e-08 1.05e-05
Smp_032320.1 Smp_205460.1 0.95 3.67e-08 5.47e-06
Smp_032320.1 Smp_205780.1 0.92 8.45e-07 4.74e-05