Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_031000.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_031000.1 0 -0.87 -10.51 -4.40 -10.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031000.1 SmLINC06890-IBu 0.90 4.68e-06 1.00e-04
Smp_031000.1 SmLINC06903-IBu 0.86 3.06e-05 5.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00093-IBu 0 -1.11 -3.33 -5.06 -7.16
SmLINC00568-IBu 0 -1.41 -4.15 -10.91 -11.85
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
Smp_026250.2 0 -0.40 -1.82 -3.70 -5.11
Smp_031000.1 0 -0.87 -10.51 -4.40 -10.51
Smp_089060.3 0 -1.26 -3.75 -9.22 -7.07
Smp_178630.1 0 -1.78 -5.50 -9.26 -9.26
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_188880.1 0 -0.67 -5.57 -9.86 -9.86
Smp_200320.1 0 -2.27 -7.31 -5.59 -8.81
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031000.1 SmLINC00093-IBu 0.94 8.79e-08 9.90e-06
Smp_031000.1 SmLINC00568-IBu 0.91 2.42e-06 9.95e-05
Smp_031000.1 SmLINC06890-IBu 0.90 4.68e-06 1.00e-04
Smp_031000.1 Smp_026250.2 0.91 2.48e-06 1.00e-04
Smp_031000.1 Smp_089060.3 0.94 9.68e-08 1.05e-05
Smp_031000.1 Smp_178630.1 0.93 4.02e-07 2.82e-05
Smp_182890.1 Smp_031000.1 0.92 8.20e-07 4.64e-05
Smp_031000.1 Smp_188880.1 0.94 8.41e-08 9.62e-06
Smp_200320.1 Smp_031000.1 0.94 9.27e-08 1.02e-05
Smp_205860.1 Smp_031000.1 0.90 3.13e-06 1.00e-04