Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_030830.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
Smp_030830.1 0 6.70 6.36 8.23 8.69

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_030830.1 SmLINC00376-IBu 0.81 2.00e-04 2.60e-03
Smp_030830.1 SmLINC02255-IBu -0.86 3.42e-05 6.00e-04
Smp_030830.1 SmLINC02630-IBu -0.86 3.55e-05 6.00e-04
Smp_030830.1 SmLINC02657-IBu -0.84 7.21e-05 1.10e-03
Smp_030830.1 SmLINC05990-IBu 0.81 2.00e-04 2.60e-03
Smp_030830.1 SmLINC06128-IBu -0.80 3.00e-04 3.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_030830.1 0 6.70 6.36 8.23 8.69
Smp_130790.1 0 8.99 8.69 10.99 11.23

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_130790.1 Smp_030830.1 0.91 2.44e-06 1.00e-04