Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_030050.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00007-IBu 0 2.71 2.19 5.12 7.33
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02776-IBu 0 4.33 2.79 6.19 9.25
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04237-IBu 0 0.00 0.00 3.71 7.42
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
Smp_030050.1 0 1.44 3.28 4.73 6.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_030050.1 SmLINC00001-IBu 0.84 6.29e-05 1.00e-03
Smp_030050.1 SmLINC00004-IBu 0.83 1.00e-04 1.50e-03
Smp_030050.1 SmLINC00007-IBu 0.87 2.36e-05 4.00e-04
Smp_030050.1 SmLINC00266-IBu 0.86 2.93e-05 5.00e-04
Smp_030050.1 SmLINC01520-IBu 0.91 2.50e-06 9.84e-05
Smp_030050.1 SmLINC02029-IBu 0.83 9.63e-05 1.30e-03
Smp_030050.1 SmLINC02255-IBu -0.81 2.00e-04 2.70e-03
Smp_030050.1 SmLINC02376-IBu 0.81 2.00e-04 2.30e-03
Smp_030050.1 SmLINC02539-IBu 0.88 1.05e-05 2.00e-04
Smp_030050.1 SmLINC02540-IBu 0.88 1.13e-05 2.00e-04
Smp_030050.1 SmLINC02545-IBu 0.81 2.00e-04 2.30e-03
Smp_030050.1 SmLINC02577-IBu 0.89 5.26e-06 1.00e-04
Smp_030050.1 SmLINC02630-IBu -0.81 1.00e-04 2.20e-03
Smp_030050.1 SmLINC02776-IBu 0.83 1.00e-04 1.40e-03
Smp_030050.1 SmLINC02783-IBu 0.86 3.03e-05 5.00e-04
Smp_030050.1 SmLINC02786-IBu 0.83 1.00e-04 1.40e-03
Smp_030050.1 SmLINC03326-IBu 0.84 8.77e-05 1.20e-03
Smp_030050.1 SmLINC03658-IBu 0.86 3.44e-05 6.00e-04
Smp_030050.1 SmLINC03927-IBu 0.80 2.00e-04 2.80e-03
Smp_030050.1 SmLINC04235-IBu 0.82 1.00e-04 2.10e-03
Smp_030050.1 SmLINC04237-IBu 0.82 1.00e-04 1.80e-03
Smp_030050.1 SmLINC04421-IBu 0.83 1.00e-04 1.60e-03
Smp_030050.1 SmLINC04896-IBu 0.80 2.00e-04 2.80e-03
Smp_030050.1 SmLINC05289-IBu 0.81 2.00e-04 2.70e-03
Smp_030050.1 SmLINC05404-IBu 0.85 5.02e-05 8.00e-04
Smp_030050.1 SmLINC05604-IBu 0.86 2.92e-05 5.00e-04
Smp_030050.1 SmLINC05684-IBu 0.87 1.99e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_030050.1 0 1.44 3.28 4.73 6.34
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_030050.1 Smp_037720.1 0.9 2.87e-06 1.00e-04
Smp_030050.1 Smp_137810.1 0.9 3.42e-06 1.00e-04
Smp_030050.1 Smp_196830.1 0.9 2.88e-06 1.00e-04