Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_029940.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_029940.1 0 0.49 2.88 -3.66 -1.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_029940.1 SmLINC00372-IBu 0.96 3.76e-09 1.11e-06
Smp_029940.1 SmLINC01316-IBu 0.88 1.24e-05 3.00e-04
Smp_029940.1 SmLINC04430-IBu 0.91 1.35e-06 6.38e-05
Smp_029940.1 SmLINC04947-IBu 0.84 8.52e-05 1.20e-03
Smp_029940.1 SmLINC05559-IBu 0.93 2.65e-07 2.02e-05
Smp_029940.1 SmLINC06700-IBu 0.89 5.35e-06 1.00e-04
Smp_029940.1 SmLINC06836-IBu 0.95 3.58e-08 5.08e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_006830.1 0 -0.91 -12.50 -0.79 -0.49
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_029940.1 0 0.49 2.88 -3.66 -1.65
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_029940.1 Smp_006830.1 -0.90 4.16e-06 1.00e-04
Smp_010140.2 Smp_029940.1 0.91 2.32e-06 9.66e-05
Smp_029940.1 Smp_021340.3 0.90 3.64e-06 1.00e-04
Smp_029940.1 Smp_032120.1 0.96 5.10e-09 1.46e-06
Smp_029940.1 Smp_062070.1 0.95 1.62e-08 3.16e-06
Smp_029940.1 Smp_084940.2 0.94 8.01e-08 9.30e-06
Smp_029940.1 Smp_098370.1 0.94 8.31e-08 9.53e-06
Smp_103540.1 Smp_029940.1 0.94 1.29e-07 1.29e-05
Smp_138080.1 Smp_029940.1 0.92 6.11e-07 3.78e-05
Smp_029940.1 Smp_159070.3 0.96 9.98e-09 2.28e-06
Smp_029940.1 Smp_159150.1 0.93 3.47e-07 2.55e-05
Smp_200120.1 Smp_029940.1 0.90 4.79e-06 1.00e-04