Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_029240.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
Smp_029240.1 0 3.97 4.74 2.59 1.22

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_029240.1 SmLINC00372-IBu 0.81 1.00e-04 2.30e-03
Smp_029240.1 SmLINC01316-IBu 0.83 1.00e-04 1.50e-03
Smp_029240.1 SmLINC02646-IBu 0.87 1.72e-05 3.00e-04
Smp_029240.1 SmLINC06646-IBu 0.92 1.01e-06 5.17e-05
Smp_029240.1 SmLINC06700-IBu 0.85 4.14e-05 7.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_029240.1 0 3.97 4.74 2.59 1.22
Smp_033950.3 0 10.15 11.01 9.52 8.41
Smp_040970.3 0 11.70 13.01 5.20 8.78
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_064590.3 0 9.71 10.57 10.06 10.55
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_141630.4 0 12.63 13.76 12.50 12.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_029240.1 Smp_017650.1 0.97 1.45e-09 6.47e-07
Smp_029240.1 Smp_021340.3 0.98 1.10e-10 1.24e-07
Smp_029240.1 Smp_033950.3 0.96 2.53e-09 9.26e-07
Smp_029240.1 Smp_040970.3 0.91 1.30e-06 6.44e-05
Smp_029240.1 Smp_059340.3 0.91 1.26e-06 6.30e-05
Smp_062610.2 Smp_029240.1 0.91 2.22e-06 9.37e-05
Smp_029240.1 Smp_064590.3 0.90 3.66e-06 1.00e-04
Smp_029240.1 Smp_083380.2 0.93 2.93e-07 2.26e-05
Smp_029240.1 Smp_084940.2 0.91 1.86e-06 8.26e-05
Smp_029240.1 Smp_098370.1 0.94 1.65e-07 1.52e-05
Smp_029240.1 Smp_099160.4 0.96 8.70e-09 2.08e-06
Smp_103540.1 Smp_029240.1 0.90 2.86e-06 1.00e-04
Smp_029240.1 Smp_141630.4 0.93 3.00e-07 2.30e-05