Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_028990.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_028990.3 0 -1.23 -2.49 -10.45 -10.45

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_028990.3 SmLINC02038-IBu 0.82 1.00e-04 1.70e-03
Smp_028990.3 SmLINC03769-IBu 0.85 5.19e-05 8.00e-04
Smp_028990.3 SmLINC05274-IBu 0.82 1.00e-04 1.70e-03
Smp_028990.3 SmLINC06890-IBu 0.87 2.16e-05 4.00e-04
Smp_028990.3 SmLINC06903-IBu 0.86 3.43e-05 6.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00093-IBu 0 -1.11 -3.33 -5.06 -7.16
SmLINC00298-IBu 0 -1.03 -2.32 -8.70 -8.70
SmLINC00568-IBu 0 -1.41 -4.15 -10.91 -11.85
SmLINC01675-IBu 0 -0.80 -1.29 -3.92 -5.49
SmLINC03574-IBu 0 -1.17 -2.16 -3.29 -5.27
Smp_009310.4 0 -2.57 -4.50 -7.03 -8.00
Smp_014670.1 0 -1.55 -1.47 -4.90 -6.50
Smp_028990.3 0 -1.23 -2.49 -10.45 -10.45
Smp_034420.1 0 -1.76 -6.68 -4.27 -4.65
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_080920.3 0 -0.58 -3.50 -2.71 -4.51
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
Smp_111320.1 0 -0.97 -2.64 -4.04 -5.54
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_205550.1 0 -1.80 -2.45 -3.88 -5.14
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_028990.3 SmLINC00093-IBu 0.92 8.29e-07 4.68e-05
Smp_028990.3 SmLINC00298-IBu 0.90 2.92e-06 1.00e-04
Smp_028990.3 SmLINC00568-IBu 0.92 1.19e-06 6.06e-05
Smp_028990.3 SmLINC01675-IBu 0.93 3.80e-07 2.71e-05
Smp_028990.3 SmLINC03574-IBu 0.90 3.85e-06 1.00e-04
Smp_009310.4 Smp_028990.3 0.90 3.51e-06 1.00e-04
Smp_014670.1 Smp_028990.3 0.92 7.33e-07 4.28e-05
Smp_034420.1 Smp_028990.3 0.91 1.57e-06 7.35e-05
Smp_043670.2 Smp_028990.3 0.92 1.15e-06 5.88e-05
Smp_080920.3 Smp_028990.3 0.90 3.04e-06 1.00e-04
Smp_096020.1 Smp_028990.3 0.93 2.95e-07 2.28e-05
Smp_111320.1 Smp_028990.3 0.91 1.75e-06 7.94e-05
Smp_182890.1 Smp_028990.3 0.90 3.86e-06 1.00e-04
Smp_205550.1 Smp_028990.3 0.93 4.40e-07 3.01e-05
Smp_205860.1 Smp_028990.3 0.96 1.28e-08 2.70e-06