Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_028990.2 Data

Correlation between Smp_028990.2 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_028990.2 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_028990.2 0 -2.03 -4.85 -4.73 -6.76

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_028990.2 SmLINC02039-IBu 0.91 2.41e-06 9.59e-05
Smp_028990.2 SmLINC02678-IBu 0.82 1.00e-04 1.70e-03
Smp_028990.2 SmLINC02888-IBu 0.88 1.25e-05 3.00e-04
Smp_028990.2 SmLINC05989-IBu 0.91 2.37e-06 9.49e-05
Smp_028990.2 SmLINC06128-IBu 0.90 3.04e-06 1.00e-04
Smp_028990.2 SmLINC06892-IBu 0.80 2.00e-04 3.00e-03

Correlation between Smp_028990.2 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_016200.1 0 -3.14 -11.01 -6.75 -11.01
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_028990.2 0 -2.03 -4.85 -4.73 -6.76
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016200.1 Smp_028990.2 0.93 1.99e-07 1.73e-05
Smp_018880.1 Smp_028990.2 0.94 7.54e-08 8.93e-06
Smp_071380.2 Smp_028990.2 0.90 3.89e-06 1.00e-04
Smp_102670.1 Smp_028990.2 0.91 1.39e-06 6.74e-05
Smp_106390.1 Smp_028990.2 0.96 6.28e-09 1.67e-06
Smp_134410.1 Smp_028990.2 0.91 2.49e-06 1.00e-04
Smp_145810.2 Smp_028990.2 0.91 1.60e-06 7.46e-05
Smp_149670.1 Smp_028990.2 0.95 2.93e-08 4.70e-06
Smp_150690.2 Smp_028990.2 0.92 9.44e-07 5.12e-05
Smp_178240.1 Smp_028990.2 0.91 1.31e-06 6.47e-05
Smp_184460.1 Smp_028990.2 0.90 3.96e-06 1.00e-04
Smp_185360.1 Smp_028990.2 0.92 6.55e-07 3.96e-05
Smp_188900.1 Smp_028990.2 0.90 3.90e-06 1.00e-04