Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_028910.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06537-IBu 0 -3.92 -3.92 4.71 2.74
Smp_028910.1 0 -0.63 -6.79 1.23 1.01

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_028910.1 SmLINC00484-IBu 0.82 1.00e-04 1.80e-03
Smp_028910.1 SmLINC00548-IBu 0.80 3.00e-04 3.30e-03
Smp_028910.1 SmLINC00633-IBu 0.85 4.94e-05 8.00e-04
Smp_028910.1 SmLINC01122-IBu 0.84 6.55e-05 1.00e-03
Smp_028910.1 SmLINC01139-IBu 0.86 3.20e-05 6.00e-04
Smp_028910.1 SmLINC01538-IBu 0.85 4.03e-05 7.00e-04
Smp_028910.1 SmLINC01569-IBu 0.85 4.01e-05 7.00e-04
Smp_028910.1 SmLINC01733-IBu 0.82 1.00e-04 2.10e-03
Smp_028910.1 SmLINC03309-IBu 0.83 1.00e-04 1.60e-03
Smp_028910.1 SmLINC04345-IBu 0.80 3.00e-04 3.30e-03
Smp_028910.1 SmLINC04478-IBu 0.89 6.23e-06 1.00e-04
Smp_028910.1 SmLINC04521-IBu 0.86 2.93e-05 5.00e-04
Smp_028910.1 SmLINC04637-IBu 0.80 2.00e-04 2.90e-03
Smp_028910.1 SmLINC04663-IBu 0.85 5.59e-05 9.00e-04
Smp_028910.1 SmLINC06444-IBu 0.82 1.00e-04 2.00e-03
Smp_028910.1 SmLINC06537-IBu 0.80 2.00e-04 2.80e-03