Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_028860.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC06021-IBu 0 0.49 1.13 -8.68 -8.68
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_028860.1 0 -0.07 -0.66 -4.17 -4.88

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_028860.1 SmLINC00294-IBu 0.83 1.00e-04 1.40e-03
Smp_028860.1 SmLINC02026-IBu 0.82 1.00e-04 1.80e-03
Smp_028860.1 SmLINC04421-IBu -0.81 2.00e-04 2.40e-03
Smp_028860.1 SmLINC06021-IBu 0.86 3.44e-05 6.00e-04
Smp_028860.1 SmLINC06490-IBu 0.91 1.80e-06 7.81e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_028860.1 0 -0.07 -0.66 -4.17 -4.88
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_205470.1 0 0.16 -0.98 -10.60 -7.47
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_028860.1 Smp_086600.1 0.91 2.38e-06 9.85e-05
Smp_028860.1 Smp_205470.1 0.90 2.83e-06 1.00e-04
Smp_028860.1 Smp_212510.1 0.92 9.16e-07 5.01e-05