Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_027500.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_027500.1 0 -0.52 1.53 4.18 4.77

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_027500.1 SmLINC00004-IBu 0.80 2.00e-04 3.00e-03
Smp_027500.1 SmLINC00282-IBu -0.81 2.00e-04 2.40e-03
Smp_027500.1 SmLINC00369-IBu 0.84 7.42e-05 1.10e-03
Smp_027500.1 SmLINC00525-IBu 0.82 1.00e-04 1.70e-03
Smp_027500.1 SmLINC00556-IBu -0.80 3.00e-04 3.40e-03
Smp_027500.1 SmLINC00633-IBu 0.82 1.00e-04 1.70e-03
Smp_027500.1 SmLINC01084-IBu 0.85 5.41e-05 9.00e-04
Smp_027500.1 SmLINC01122-IBu 0.88 1.10e-05 2.00e-04
Smp_027500.1 SmLINC01431-IBu 0.84 8.32e-05 1.20e-03
Smp_027500.1 SmLINC01432-IBu 0.88 9.85e-06 2.00e-04
Smp_027500.1 SmLINC01538-IBu 0.80 2.00e-04 2.90e-03
Smp_027500.1 SmLINC01569-IBu 0.88 9.59e-06 2.00e-04
Smp_027500.1 SmLINC01733-IBu 0.83 1.00e-04 1.60e-03
Smp_027500.1 SmLINC02255-IBu -0.88 1.36e-05 3.00e-04
Smp_027500.1 SmLINC02630-IBu -0.80 3.00e-04 3.40e-03
Smp_027500.1 SmLINC02657-IBu -0.89 6.55e-06 1.00e-04
Smp_027500.1 SmLINC03849-IBu -0.83 1.00e-04 1.40e-03
Smp_027500.1 SmLINC03927-IBu 0.80 2.00e-04 2.80e-03
Smp_027500.1 SmLINC04421-IBu 0.88 1.45e-05 3.00e-04
Smp_027500.1 SmLINC04423-IBu 0.83 1.00e-04 1.60e-03
Smp_027500.1 SmLINC04478-IBu 0.90 3.64e-06 1.00e-04
Smp_027500.1 SmLINC04521-IBu 0.89 6.79e-06 2.00e-04
Smp_027500.1 SmLINC05147-IBu 0.80 3.00e-04 3.20e-03
Smp_027500.1 SmLINC05274-IBu -0.80 2.00e-04 3.00e-03
Smp_027500.1 SmLINC05284-IBu -0.86 3.35e-05 6.00e-04
Smp_027500.1 SmLINC05289-IBu 0.82 1.00e-04 1.70e-03
Smp_027500.1 SmLINC05604-IBu 0.83 1.00e-04 1.50e-03
Smp_027500.1 SmLINC06024-IBu 0.85 5.48e-05 9.00e-04
Smp_027500.1 SmLINC06145-IBu 0.81 2.00e-04 2.50e-03
Smp_027500.1 SmLINC06535-IBu -0.84 7.16e-05 1.10e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_027500.1 0 -0.52 1.53 4.18 4.77
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_203090.1 0 0.00 0.00 10.35 10.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_040970.2 Smp_027500.1 0.91 2.45e-06 1.00e-04
Smp_051210.3 Smp_027500.1 0.93 4.01e-07 2.82e-05
Smp_052280.2 Smp_027500.1 0.92 7.95e-07 4.54e-05
Smp_090140.1 Smp_027500.1 0.90 3.93e-06 1.00e-04
Smp_094050.1 Smp_027500.1 0.91 2.29e-06 9.57e-05
Smp_203090.1 Smp_027500.1 0.90 2.67e-06 1.00e-04