Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_027010.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC03406-IBu 0 4.88 2.89 -1.93 3.48
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC03486-IBu 0 0.84 -0.08 -7.36 -7.36
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
Smp_027010.1 0 1.13 0.23 -1.74 -4.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_027010.1 SmLINC00294-IBu 0.82 1.00e-04 2.00e-03
Smp_027010.1 SmLINC03111-IBu 0.82 1.00e-04 1.90e-03
Smp_027010.1 SmLINC03395-IBu 0.92 8.15e-07 4.44e-05
Smp_027010.1 SmLINC03406-IBu 0.80 2.00e-04 2.80e-03
Smp_027010.1 SmLINC03443-IBu 0.87 2.16e-05 4.00e-04
Smp_027010.1 SmLINC03486-IBu 0.85 5.78e-05 9.00e-04
Smp_027010.1 SmLINC04074-IBu 0.90 3.18e-06 1.00e-04