Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_026910.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
Smp_026910.2 0 2.49 2.18 4.84 4.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_026910.2 SmLINC00376-IBu 0.84 7.93e-05 1.10e-03
Smp_026910.2 SmLINC00484-IBu 0.80 2.00e-04 3.00e-03
Smp_026910.2 SmLINC01122-IBu 0.81 2.00e-04 2.50e-03
Smp_026910.2 SmLINC01171-IBu 0.86 3.16e-05 6.00e-04
Smp_026910.2 SmLINC01538-IBu 0.81 2.00e-04 2.40e-03
Smp_026910.2 SmLINC01569-IBu 0.82 1.00e-04 2.10e-03
Smp_026910.2 SmLINC01733-IBu 0.81 1.00e-04 2.20e-03
Smp_026910.2 SmLINC02581-IBu 0.82 1.00e-04 2.10e-03
Smp_026910.2 SmLINC02657-IBu -0.84 7.25e-05 1.10e-03
Smp_026910.2 SmLINC03236-IBu 0.89 7.37e-06 2.00e-04
Smp_026910.2 SmLINC03309-IBu 0.81 2.00e-04 2.70e-03
Smp_026910.2 SmLINC03693-IBu 0.83 1.00e-04 1.50e-03
Smp_026910.2 SmLINC04475-IBu 0.80 3.00e-04 3.30e-03
Smp_026910.2 SmLINC05990-IBu 0.86 3.33e-05 6.00e-04
Smp_026910.2 SmLINC06010-IBu 0.84 7.48e-05 1.10e-03
Smp_026910.2 SmLINC06221-IBu 0.82 1.00e-04 1.80e-03
Smp_026910.2 SmLINC06444-IBu 0.82 1.00e-04 1.70e-03
Smp_026910.2 SmLINC06449-IBu 0.82 1.00e-04 1.90e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_026910.2 0 2.49 2.18 4.84 4.65
Smp_130790.1 0 8.99 8.69 10.99 11.23

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_130790.1 Smp_026910.2 0.97 4.84e-10 3.20e-07