Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_026450.1 Data

Correlation between Smp_026450.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_026450.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
Smp_026450.1 0 -1.24 -2.94 -5.88 -5.90

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_026450.1 SmLINC02039-IBu 0.83 1.00e-04 1.50e-03
Smp_026450.1 SmLINC05989-IBu 0.91 1.42e-06 6.59e-05
Smp_026450.1 SmLINC06128-IBu 0.81 2.00e-04 2.60e-03

Correlation between Smp_026450.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_016200.1 0 -3.14 -11.01 -6.75 -11.01
Smp_026450.1 0 -1.24 -2.94 -5.88 -5.90
Smp_033000.1 0 -1.72 -11.37 -13.15 -11.62
Smp_058360.2 0 -2.02 -6.41 -4.83 -10.18
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_165180.1 0 -1.47 -9.43 -12.79 -7.00
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016200.1 Smp_026450.1 0.95 5.40e-08 7.12e-06
Smp_033000.1 Smp_026450.1 0.97 9.54e-10 4.94e-07
Smp_026450.1 Smp_058360.2 0.95 4.57e-08 6.35e-06
Smp_106390.1 Smp_026450.1 0.93 3.05e-07 2.33e-05
Smp_145810.2 Smp_026450.1 0.90 3.80e-06 1.00e-04
Smp_026450.1 Smp_165180.1 0.93 2.43e-07 1.99e-05
Smp_188900.1 Smp_026450.1 0.90 3.58e-06 1.00e-04