Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_026400.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC02786-IBu 0 0.00 1.47 4.70 9.60
SmLINC03658-IBu 0 3.74 4.41 6.00 8.36
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_026400.1 0 0.88 0.91 0.27 4.54

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_026400.1 SmLINC01520-IBu 0.80 2.00e-04 2.70e-03
Smp_026400.1 SmLINC02029-IBu 0.85 4.08e-05 7.00e-04
Smp_026400.1 SmLINC02376-IBu 0.82 1.00e-04 1.90e-03
Smp_026400.1 SmLINC02577-IBu 0.81 2.00e-04 2.60e-03
Smp_026400.1 SmLINC02783-IBu 0.86 3.67e-05 6.00e-04
Smp_026400.1 SmLINC02786-IBu 0.87 1.60e-05 3.00e-04
Smp_026400.1 SmLINC03658-IBu 0.83 9.23e-05 1.30e-03
Smp_026400.1 SmLINC04235-IBu 0.91 1.42e-06 6.61e-05
Smp_026400.1 SmLINC04627-IBu 0.88 1.28e-05 3.00e-04
Smp_026400.1 SmLINC04896-IBu 0.81 2.00e-04 2.60e-03
Smp_026400.1 SmLINC05404-IBu 0.87 1.53e-05 3.00e-04
Smp_026400.1 SmLINC05684-IBu 0.88 1.23e-05 3.00e-04
Smp_026400.1 SmLINC06239-IBu 0.95 2.83e-08 4.32e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_026400.1 0 0.88 0.91 0.27 4.54
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_137700.1 0 2.72 4.76 8.79 13.14
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_152150.1 0 0.00 0.00 8.69 15.96
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_181070.1 0 0.13 0.63 8.07 11.05

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_026400.1 0.95 2.69e-08 4.44e-06
Smp_026400.1 Smp_004420.3 0.92 8.21e-07 4.64e-05
Smp_026400.1 Smp_105450.2 0.91 1.89e-06 8.38e-05
Smp_026400.1 Smp_130970.1 0.97 6.11e-10 3.71e-07
Smp_137460.1 Smp_026400.1 0.96 3.23e-09 1.08e-06
Smp_026400.1 Smp_137700.1 0.93 2.59e-07 2.08e-05
Smp_026400.1 Smp_138360.1 0.96 2.40e-09 8.96e-07
Smp_026400.1 Smp_139160.1 0.91 1.40e-06 6.76e-05
Smp_026400.1 Smp_144440.1 0.92 8.05e-07 4.58e-05
Smp_152150.1 Smp_026400.1 0.94 6.89e-08 8.39e-06
Smp_026400.1 Smp_164400.1 0.94 6.78e-08 8.30e-06
Smp_181070.1 Smp_026400.1 0.91 2.38e-06 9.84e-05