Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_024390.3 Data

Correlation between Smp_024390.3 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_024390.3 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_024390.3 0 0.14 1.58 2.91 4.12

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_024390.3 SmLINC00001-IBu 0.83 1.00e-04 1.50e-03
Smp_024390.3 SmLINC00004-IBu 0.81 2.00e-04 2.50e-03
Smp_024390.3 SmLINC00556-IBu -0.83 9.90e-05 1.40e-03
Smp_024390.3 SmLINC02255-IBu -0.89 7.24e-06 2.00e-04
Smp_024390.3 SmLINC02630-IBu -0.84 6.97e-05 1.00e-03
Smp_024390.3 SmLINC02657-IBu -0.84 6.57e-05 1.00e-03
Smp_024390.3 SmLINC02888-IBu -0.80 2.00e-04 2.80e-03
Smp_024390.3 SmLINC04235-IBu 0.80 3.00e-04 3.30e-03
Smp_024390.3 SmLINC05284-IBu -0.84 8.80e-05 1.20e-03
Smp_024390.3 SmLINC06535-IBu -0.85 5.50e-05 9.00e-04

Correlation between Smp_024390.3 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data