Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_024360.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01429-IBu 0 1.94 -0.56 -4.06 -6.10
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC03111-IBu 0 3.25 1.95 -5.91 -5.91
SmLINC03116-IBu 0 3.51 0.92 -2.09 -5.82
SmLINC03443-IBu 0 2.85 1.67 -0.40 -9.21
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_024360.2 0 3.66 2.97 0.48 -1.11

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_024360.2 SmLINC01429-IBu 0.85 4.23e-05 7.00e-04
Smp_024360.2 SmLINC01979-IBu 0.85 4.70e-05 8.00e-04
Smp_024360.2 SmLINC03111-IBu 0.86 3.25e-05 6.00e-04
Smp_024360.2 SmLINC03116-IBu 0.82 1.00e-04 1.70e-03
Smp_024360.2 SmLINC03443-IBu 0.89 8.80e-06 2.00e-04
Smp_024360.2 SmLINC04074-IBu 0.83 1.00e-04 1.40e-03
Smp_024360.2 SmLINC06646-IBu 0.87 2.00e-05 4.00e-04