Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_024140.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC03485-IBu 0 -0.93 -1.24 -9.54 -9.54
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
Smp_024140.1 0 0.15 -0.05 -5.68 -10.99

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_024140.1 SmLINC01979-IBu 0.87 1.85e-05 4.00e-04
Smp_024140.1 SmLINC02646-IBu 0.85 5.53e-05 9.00e-04
Smp_024140.1 SmLINC03485-IBu 0.82 1.00e-04 1.90e-03
Smp_024140.1 SmLINC06646-IBu 0.89 5.07e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02967-IBu 0 2.65 1.34 -9.59 -9.59
SmLINC03226-IBu 0 -0.03 -0.23 -5.79 -4.81
SmLINC03606-IBu 0 0.71 -0.48 -7.34 -3.89
SmLINC04103-IBu 0 1.84 1.78 -2.37 -4.56
SmLINC05399-IBu 0 0.77 -1.10 -5.24 -3.60
SmLINC06779-IBu 0 4.01 4.11 0.72 1.12
Smp_024140.1 0 0.15 -0.05 -5.68 -10.99
Smp_032740.1 0 2.87 3.50 0.35 -1.77
Smp_037610.1 0 1.63 1.24 -3.86 -4.68
Smp_046690.1 0 2.98 1.68 -1.29 -1.41
Smp_075640.2 0 2.99 2.20 -1.24 -3.44
Smp_123000.2 0 1.85 1.78 -1.88 -2.33
Smp_146920.1 0 0.99 1.37 -7.20 -7.20
Smp_157840.1 0 1.84 2.05 -4.37 -2.80
Smp_203400.1 0 1.56 0.55 -7.76 -4.64

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_024140.1 SmLINC02967-IBu 0.90 3.03e-06 1.00e-04
Smp_024140.1 SmLINC03226-IBu 0.90 2.74e-06 1.00e-04
Smp_024140.1 SmLINC03606-IBu 0.90 3.16e-06 1.00e-04
Smp_024140.1 SmLINC04103-IBu 0.94 6.37e-08 7.96e-06
Smp_024140.1 SmLINC05399-IBu 0.92 7.84e-07 4.49e-05
Smp_024140.1 SmLINC06779-IBu 0.93 2.64e-07 2.11e-05
Smp_032740.1 Smp_024140.1 0.90 3.55e-06 1.00e-04
Smp_037610.1 Smp_024140.1 0.93 3.06e-07 2.34e-05
Smp_046690.1 Smp_024140.1 0.91 2.35e-06 9.75e-05
Smp_075640.2 Smp_024140.1 0.91 2.43e-06 9.99e-05
Smp_123000.2 Smp_024140.1 0.92 1.00e-06 5.36e-05
Smp_146920.1 Smp_024140.1 0.90 4.24e-06 1.00e-04
Smp_157840.1 Smp_024140.1 0.93 2.36e-07 1.95e-05
Smp_203400.1 Smp_024140.1 0.93 2.12e-07 1.81e-05