Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_023140.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06021-IBu 0 0.49 1.13 -8.68 -8.68
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_023140.1 0 -0.84 -0.87 -5.26 -4.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_023140.1 SmLINC00004-IBu -0.82 1.00e-04 1.90e-03
Smp_023140.1 SmLINC00369-IBu -0.82 1.00e-04 1.80e-03
Smp_023140.1 SmLINC00372-IBu 0.84 7.25e-05 1.10e-03
Smp_023140.1 SmLINC00376-IBu -0.80 3.00e-04 3.30e-03
Smp_023140.1 SmLINC00525-IBu -0.84 8.08e-05 1.20e-03
Smp_023140.1 SmLINC01084-IBu -0.83 1.00e-04 1.40e-03
Smp_023140.1 SmLINC01316-IBu 0.86 3.08e-05 6.00e-04
Smp_023140.1 SmLINC01431-IBu -0.84 6.73e-05 1.00e-03
Smp_023140.1 SmLINC02026-IBu 0.85 3.99e-05 7.00e-04
Smp_023140.1 SmLINC02084-IBu -0.82 1.00e-04 2.00e-03
Smp_023140.1 SmLINC04421-IBu -0.84 8.04e-05 1.20e-03
Smp_023140.1 SmLINC04423-IBu -0.81 2.00e-04 2.60e-03
Smp_023140.1 SmLINC04478-IBu -0.80 2.00e-04 2.70e-03
Smp_023140.1 SmLINC05289-IBu -0.80 3.00e-04 3.20e-03
Smp_023140.1 SmLINC05604-IBu -0.81 2.00e-04 2.40e-03
Smp_023140.1 SmLINC06021-IBu 0.81 1.00e-04 2.30e-03
Smp_023140.1 SmLINC06024-IBu -0.84 7.09e-05 1.10e-03
Smp_023140.1 SmLINC06490-IBu 0.96 5.07e-09 1.36e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_023140.1 0 -0.84 -0.87 -5.26 -4.87
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_160410.1 0 -2.26 -1.17 -10.25 -6.19
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_200120.1 0 0.50 0.80 -8.32 -11.63
Smp_205060.1 0 0.36 1.28 -6.63 -10.51
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_090930.5 Smp_023140.1 0.90 3.31e-06 1.00e-04
Smp_098890.1 Smp_023140.1 0.90 3.30e-06 1.00e-04
Smp_023140.1 Smp_160410.1 0.91 2.02e-06 8.78e-05
Smp_194060.1 Smp_023140.1 0.92 1.05e-06 5.55e-05
Smp_200120.1 Smp_023140.1 0.90 3.63e-06 1.00e-04
Smp_205060.1 Smp_023140.1 0.91 1.38e-06 6.72e-05
Smp_212510.1 Smp_023140.1 0.91 2.19e-06 9.28e-05