Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_022730.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_022730.1 0 -0.73 -1.37 -5.39 -4.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_022730.1 SmLINC02255-IBu 0.84 7.82e-05 1.10e-03
Smp_022730.1 SmLINC02630-IBu 0.91 2.49e-06 9.82e-05
Smp_022730.1 SmLINC05284-IBu 0.83 9.56e-05 1.30e-03
Smp_022730.1 SmLINC05720-IBu 0.90 4.61e-06 1.00e-04
Smp_022730.1 SmLINC06535-IBu 0.84 8.44e-05 1.20e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_022730.1 0 -0.73 -1.37 -5.39 -4.86
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_083340.4 0 -0.76 -5.02 -9.88 -12.95
Smp_097800.1 0 -1.17 -2.80 -12.04 -16.29
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_077690.1 Smp_022730.1 0.90 4.47e-06 1.00e-04
Smp_083340.4 Smp_022730.1 0.92 1.08e-06 5.64e-05
Smp_022730.1 Smp_097800.1 0.96 2.47e-09 9.14e-07
Smp_184760.1 Smp_022730.1 0.91 1.32e-06 6.51e-05