Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_022430.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_022430.1 SmLINC02039-IBu 0.86 3.77e-05 6.00e-04
Smp_022430.1 SmLINC02678-IBu 0.91 2.41e-06 9.61e-05
Smp_022430.1 SmLINC02888-IBu 0.86 3.92e-05 7.00e-04
Smp_022430.1 SmLINC06128-IBu 0.90 2.58e-06 1.00e-04
Smp_022430.1 SmLINC06892-IBu 0.83 1.00e-04 1.40e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_022430.1 Smp_009650.2 0.90 4.86e-06 1.00e-04
Smp_018880.1 Smp_022430.1 0.97 5.67e-10 3.54e-07
Smp_065580.1 Smp_022430.1 0.90 3.08e-06 1.00e-04
Smp_022430.1 Smp_071380.2 0.92 8.03e-07 4.57e-05
Smp_022430.1 Smp_085290.3 0.92 7.43e-07 4.33e-05
Smp_102670.1 Smp_022430.1 0.99 7.48e-13 5.54e-09
Smp_106390.1 Smp_022430.1 0.94 1.67e-07 1.54e-05
Smp_022430.1 Smp_133770.1 0.99 4.35e-15 2.35e-10
Smp_134410.1 Smp_022430.1 0.93 3.73e-07 2.68e-05
Smp_149670.1 Smp_022430.1 0.91 1.63e-06 7.54e-05
Smp_150690.2 Smp_022430.1 0.90 3.58e-06 1.00e-04
Smp_022430.1 Smp_153240.1 0.99 4.18e-14 9.55e-10
Smp_169190.1 Smp_022430.1 0.98 6.96e-11 9.29e-08
Smp_178240.1 Smp_022430.1 0.98 5.63e-11 8.11e-08
Smp_184460.1 Smp_022430.1 0.93 2.98e-07 2.29e-05
Smp_185360.1 Smp_022430.1 0.96 2.80e-09 9.89e-07
Smp_206150.1 Smp_022430.1 0.91 1.33e-06 6.52e-05