Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_022320.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_022320.1 0 0.31 -0.15 -2.49 -6.20

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_022320.1 SmLINC00372-IBu 0.87 2.04e-05 4.00e-04
Smp_022320.1 SmLINC01316-IBu 0.94 1.92e-07 1.61e-05
Smp_022320.1 SmLINC01979-IBu 0.85 5.77e-05 9.00e-04
Smp_022320.1 SmLINC02646-IBu 0.93 5.14e-07 3.21e-05
Smp_022320.1 SmLINC04074-IBu 0.87 2.22e-05 4.00e-04
Smp_022320.1 SmLINC06490-IBu 0.85 5.97e-05 9.00e-04
Smp_022320.1 SmLINC06646-IBu 0.93 2.78e-07 2.09e-05
Smp_022320.1 SmLINC06700-IBu 0.83 1.00e-04 1.60e-03
Smp_022320.1 SmLINC06836-IBu 0.81 1.00e-04 2.30e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_022320.1 0 0.31 -0.15 -2.49 -6.20
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_022320.1 Smp_017650.1 0.90 3.33e-06 1.00e-04
Smp_022320.1 Smp_059340.3 0.96 7.25e-09 1.84e-06
Smp_062610.2 Smp_022320.1 0.91 2.36e-06 9.79e-05
Smp_022320.1 Smp_168800.1 0.95 2.73e-08 4.48e-06
Smp_200120.1 Smp_022320.1 0.92 7.69e-07 4.44e-05