Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_021920.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
Smp_021920.1 0 0.33 1.47 -5.43 -11.17

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_021920.1 SmLINC01431-IBu -0.56 2.89e-02 7.50e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_021920.1 0 0.33 1.47 -5.43 -11.17

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_021920.1 SmLINC00372-IBu 0.87 2.17e-05 4.00e-04
Smp_021920.1 SmLINC01316-IBu 0.83 1.00e-04 1.40e-03
Smp_021920.1 SmLINC04947-IBu 0.84 6.85e-05 1.00e-03
Smp_021920.1 SmLINC05559-IBu 0.80 3.00e-04 3.20e-03
Smp_021920.1 SmLINC06836-IBu 0.85 4.47e-05 7.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06180-IBu 0 1.21 3.01 -2.19 -1.74
SmLINC06960-IBu 0 -0.54 0.75 -5.12 -8.06
Smp_006830.2 0 -0.57 2.34 -5.80 -4.64
Smp_021920.1 0 0.33 1.47 -5.43 -11.17
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_075290.4 0 0.20 2.62 -2.13 -0.42
Smp_145950.1 0 1.16 2.62 -4.07 -0.95

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_021920.1 SmLINC06180-IBu 0.90 3.35e-06 1.00e-04
Smp_021920.1 SmLINC06960-IBu 0.93 2.00e-07 1.74e-05
Smp_006830.2 Smp_021920.1 0.91 2.35e-06 9.74e-05
Smp_059530.1 Smp_021920.1 0.92 1.01e-06 5.40e-05
Smp_075290.4 Smp_021920.1 0.90 4.63e-06 1.00e-04
Smp_145950.1 Smp_021920.1 0.90 4.59e-06 1.00e-04