Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_021790.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_021790.2 0 -3.20 -1.56 2.95 3.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_021790.2 SmLINC00001-IBu 0.93 2.79e-07 2.09e-05
Smp_021790.2 SmLINC00004-IBu 0.93 2.66e-07 2.02e-05
Smp_021790.2 SmLINC00294-IBu -0.83 1.00e-04 1.40e-03
Smp_021790.2 SmLINC00369-IBu 0.90 2.57e-06 1.00e-04
Smp_021790.2 SmLINC00525-IBu 0.87 2.22e-05 4.00e-04
Smp_021790.2 SmLINC00633-IBu 0.81 2.00e-04 2.70e-03
Smp_021790.2 SmLINC01084-IBu 0.91 1.88e-06 8.05e-05
Smp_021790.2 SmLINC01122-IBu 0.85 5.84e-05 9.00e-04
Smp_021790.2 SmLINC01431-IBu 0.92 5.52e-07 3.37e-05
Smp_021790.2 SmLINC01432-IBu 0.82 1.00e-04 1.90e-03
Smp_021790.2 SmLINC01538-IBu 0.81 1.00e-04 2.30e-03
Smp_021790.2 SmLINC01569-IBu 0.83 1.00e-04 1.50e-03
Smp_021790.2 SmLINC01733-IBu 0.87 1.99e-05 4.00e-04
Smp_021790.2 SmLINC01746-IBu 0.80 2.00e-04 2.90e-03
Smp_021790.2 SmLINC02084-IBu 0.87 2.13e-05 4.00e-04
Smp_021790.2 SmLINC02255-IBu -0.84 7.45e-05 1.10e-03
Smp_021790.2 SmLINC02376-IBu 0.84 7.68e-05 1.10e-03
Smp_021790.2 SmLINC02394-IBu 0.91 1.51e-06 6.88e-05
Smp_021790.2 SmLINC02539-IBu 0.83 8.97e-05 1.30e-03
Smp_021790.2 SmLINC02546-IBu 0.83 8.99e-05 1.30e-03
Smp_021790.2 SmLINC02577-IBu 0.80 2.00e-04 2.90e-03
Smp_021790.2 SmLINC02630-IBu -0.81 2.00e-04 2.40e-03
Smp_021790.2 SmLINC02657-IBu -0.80 2.00e-04 2.80e-03
Smp_021790.2 SmLINC03326-IBu 0.84 8.03e-05 1.20e-03
Smp_021790.2 SmLINC03849-IBu -0.87 2.35e-05 4.00e-04
Smp_021790.2 SmLINC04235-IBu 0.84 8.21e-05 1.20e-03
Smp_021790.2 SmLINC04421-IBu 0.91 2.00e-06 8.39e-05
Smp_021790.2 SmLINC04423-IBu 0.90 4.28e-06 1.00e-04
Smp_021790.2 SmLINC04478-IBu 0.86 3.42e-05 6.00e-04
Smp_021790.2 SmLINC04521-IBu 0.89 8.37e-06 2.00e-04
Smp_021790.2 SmLINC05147-IBu 0.84 6.51e-05 1.00e-03
Smp_021790.2 SmLINC05274-IBu -0.84 6.79e-05 1.00e-03
Smp_021790.2 SmLINC05284-IBu -0.81 1.00e-04 2.20e-03
Smp_021790.2 SmLINC05289-IBu 0.90 3.06e-06 1.00e-04
Smp_021790.2 SmLINC05604-IBu 0.89 8.29e-06 2.00e-04
Smp_021790.2 SmLINC06024-IBu 0.92 9.36e-07 4.89e-05
Smp_021790.2 SmLINC06145-IBu 0.90 4.54e-06 1.00e-04
Smp_021790.2 SmLINC06490-IBu -0.83 1.00e-04 1.40e-03
Smp_021790.2 SmLINC06535-IBu -0.81 2.00e-04 2.50e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_021790.2 0 -3.20 -1.56 2.95 3.87
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203090.1 0 0.00 0.00 10.35 10.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_021790.2 Smp_015850.2 -0.90 2.80e-06 1.00e-04
Smp_021790.2 Smp_024180.1 0.98 2.99e-11 5.47e-08
Smp_021790.2 Smp_024180.2 0.99 7.81e-14 1.39e-09
Smp_033260.1 Smp_021790.2 0.96 4.94e-09 1.43e-06
Smp_038870.2 Smp_021790.2 0.96 1.07e-08 2.40e-06
Smp_021790.2 Smp_040970.2 0.94 7.68e-08 9.04e-06
Smp_050350.3 Smp_021790.2 0.96 6.66e-09 1.74e-06
Smp_021790.2 Smp_052280.2 0.96 7.31e-09 1.85e-06
Smp_021790.2 Smp_056460.1 0.93 4.30e-07 2.96e-05
Smp_021790.2 Smp_079420.1 0.96 1.12e-08 2.46e-06
Smp_090140.1 Smp_021790.2 0.90 4.29e-06 1.00e-04
Smp_021790.2 Smp_094050.1 0.96 2.90e-09 1.01e-06
Smp_021790.2 Smp_131490.1 0.90 3.68e-06 1.00e-04
Smp_021790.2 Smp_137000.2 0.93 3.48e-07 2.55e-05
Smp_021790.2 Smp_155570.1 0.91 1.23e-06 6.18e-05
Smp_021790.2 Smp_156930.1 0.94 1.27e-07 1.27e-05
Smp_021790.2 Smp_192780.1 0.91 1.24e-06 6.21e-05
Smp_194860.1 Smp_021790.2 0.93 3.56e-07 2.59e-05
Smp_021790.2 Smp_201910.1 0.92 6.04e-07 3.75e-05
Smp_021790.2 Smp_202610.1 0.90 2.65e-06 1.00e-04
Smp_021790.2 Smp_203090.1 0.90 3.35e-06 1.00e-04