Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_021790.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00769-IBu 0 0.00 0.00 11.31 9.29
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01231-IBu 0 0.31 -3.75 7.29 6.55
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04432-IBu 0 0.66 2.72 5.35 5.03
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC04953-IBu 0 4.15 3.52 7.42 3.10
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
Smp_021790.1 0 -4.11 -4.04 1.46 1.40

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_021790.1 SmLINC00171-IBu 0.80 2.00e-04 2.70e-03
Smp_021790.1 SmLINC00548-IBu 0.90 4.35e-06 1.00e-04
Smp_021790.1 SmLINC00769-IBu 0.88 1.03e-05 2.00e-04
Smp_021790.1 SmLINC01066-IBu 0.81 1.00e-04 2.30e-03
Smp_021790.1 SmLINC01139-IBu 0.85 4.26e-05 7.00e-04
Smp_021790.1 SmLINC01231-IBu 0.96 9.98e-09 2.13e-06
Smp_021790.1 SmLINC01431-IBu 0.82 1.00e-04 2.00e-03
Smp_021790.1 SmLINC01538-IBu 0.85 5.71e-05 9.00e-04
Smp_021790.1 SmLINC01733-IBu 0.80 3.00e-04 3.10e-03
Smp_021790.1 SmLINC01746-IBu 0.86 3.01e-05 5.00e-04
Smp_021790.1 SmLINC02546-IBu 0.90 4.25e-06 1.00e-04
Smp_021790.1 SmLINC03309-IBu 0.85 5.04e-05 8.00e-04
Smp_021790.1 SmLINC04345-IBu 0.80 3.00e-04 3.20e-03
Smp_021790.1 SmLINC04432-IBu 0.89 8.76e-06 2.00e-04
Smp_021790.1 SmLINC04475-IBu 0.85 4.13e-05 7.00e-04
Smp_021790.1 SmLINC04637-IBu 0.85 5.05e-05 8.00e-04
Smp_021790.1 SmLINC04663-IBu 0.82 1.00e-04 2.10e-03
Smp_021790.1 SmLINC04684-IBu 0.87 1.90e-05 4.00e-04
Smp_021790.1 SmLINC04953-IBu 0.84 6.36e-05 1.00e-03
Smp_021790.1 SmLINC05258-IBu 0.84 8.17e-05 1.20e-03
Smp_021790.1 SmLINC06010-IBu 0.86 3.76e-05 6.00e-04
Smp_021790.1 SmLINC06418-IBu 0.82 1.00e-04 2.10e-03
Smp_021790.1 SmLINC06444-IBu 0.86 3.06e-05 5.00e-04
Smp_021790.1 SmLINC06536-IBu 0.83 1.00e-04 1.50e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_021790.1 0 -4.11 -4.04 1.46 1.40
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_034980.2 0 8.75 0.00 11.30 11.03

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_021790.1 Smp_031770.10 0.92 9.09e-07 4.99e-05
Smp_021790.1 Smp_034980.2 0.90 2.87e-06 1.00e-04