Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_021340.3 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_021340.3 SmLINC00372-IBu 0.88 1.00e-05 2.00e-04
Smp_021340.3 SmLINC01316-IBu 0.84 8.81e-05 1.20e-03
Smp_021340.3 SmLINC02646-IBu 0.85 5.91e-05 9.00e-04
Smp_021340.3 SmLINC06646-IBu 0.89 8.34e-06 2.00e-04
Smp_021340.3 SmLINC06700-IBu 0.90 3.00e-06 1.00e-04
Smp_021340.3 SmLINC06836-IBu 0.87 1.81e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00513-IBu 0 6.74 8.35 0.00 3.11
SmLINC00781-IBu 0 6.19 6.44 3.58 2.95
SmLINC02626-IBu 0 8.15 9.29 3.73 6.59
SmLINC02970-IBu 0 2.59 3.54 0.54 -1.36
SmLINC02981-IBu 0 5.05 5.74 0.00 0.00
SmLINC03132-IBu 0 3.76 4.91 1.54 -0.47
SmLINC03953-IBu 0 1.67 3.25 -2.76 -1.08
SmLINC04215-IBu 0 6.59 8.42 5.71 3.29
SmLINC05395-IBu 0 9.00 9.50 8.73 9.28
SmLINC06048-IBu 0 0.79 1.93 -4.19 -7.12
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06779-IBu 0 4.01 4.11 0.72 1.12
SmLINC07012-IBu 0 4.23 5.09 -1.27 -4.32
Smp_015070.2 0 4.80 5.60 1.08 -0.65
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_018800.1 0 3.14 4.22 -2.08 -1.80
Smp_019260.2 0 0.65 2.01 -0.64 -4.31
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_024820.1 0 4.10 4.75 1.46 1.82
Smp_027990.1 0 1.00 2.03 -4.13 -5.46
Smp_029240.1 0 3.97 4.74 2.59 1.22
Smp_029940.1 0 0.49 2.88 -3.66 -1.65
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_032320.2 0 -0.17 0.68 -9.42 -9.42
Smp_032740.1 0 2.87 3.50 0.35 -1.77
Smp_033950.3 0 10.15 11.01 9.52 8.41
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_040970.3 0 11.70 13.01 5.20 8.78
Smp_049600.3 0 1.80 2.94 -9.17 -1.90
Smp_052290.1 0 1.68 2.86 -1.36 -2.94
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_064590.3 0 9.71 10.57 10.06 10.55
Smp_079260.1 0 1.54 2.23 -2.79 -3.15
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_091190.1 0 2.07 2.52 -8.48 -3.36
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_099560.1 0 8.15 8.89 -2.27 -2.27
Smp_100130.2 0 8.47 10.05 8.41 9.81
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_103930.1 0 0.87 2.20 -7.48 0.71
Smp_105710.2 0 7.84 8.99 0.00 0.00
Smp_126560.1 0 1.05 1.45 -4.09 -4.98
Smp_136120.1 0 5.65 6.93 4.13 3.70
Smp_138140.1 0 2.02 2.69 -3.31 -2.76
Smp_140130.1 0 1.66 2.18 -1.05 -2.58
Smp_141630.4 0 12.63 13.76 12.50 12.34
Smp_143180.1 0 1.31 2.18 -4.27 -1.25
Smp_144120.1 0 1.28 2.86 -1.28 -2.28
Smp_145950.1 0 1.16 2.62 -4.07 -0.95
Smp_146920.1 0 0.99 1.37 -7.20 -7.20
Smp_152170.1 0 2.88 3.15 -0.68 -0.83
Smp_153210.1 0 3.24 5.11 0.30 -0.00
Smp_154170.1 0 1.83 3.24 -0.15 -1.26
Smp_155170.1 0 2.84 3.14 -1.92 0.05
Smp_157270.1 0 3.45 4.02 -0.36 -1.80
Smp_157280.1 0 4.32 5.40 2.85 1.60
Smp_157840.1 0 1.84 2.05 -4.37 -2.80
Smp_159070.4 0 3.29 5.54 2.90 0.83
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_169500.1 0 1.36 1.90 -2.93 -5.45
Smp_171420.1 0 2.93 4.14 1.74 -0.67
Smp_174170.1 0 2.27 3.86 1.11 -0.90
Smp_174750.1 0 1.35 2.65 -1.87 -1.39
Smp_175290.1 0 2.94 5.17 0.92 0.51
Smp_175300.1 0 6.82 9.29 5.85 5.56
Smp_180630.1 0 0.12 1.09 -6.32 -9.26
Smp_190370.1 0 1.12 2.62 -1.76 -2.23
Smp_194670.1 0 1.55 1.93 -1.67 -3.11
Smp_196410.1 0 0.98 1.80 -3.57 -2.94
Smp_200810.1 0 1.79 3.97 -0.86 -1.95

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_021340.3 SmLINC00513-IBu 0.94 1.19e-07 1.22e-05
Smp_021340.3 SmLINC00781-IBu 0.94 1.24e-07 1.25e-05
Smp_021340.3 SmLINC02626-IBu 0.94 6.86e-08 8.37e-06
Smp_021340.3 SmLINC02970-IBu 0.94 1.71e-07 1.56e-05
Smp_021340.3 SmLINC02981-IBu 0.93 4.03e-07 2.82e-05
Smp_021340.3 SmLINC03132-IBu 0.97 2.12e-09 8.28e-07
Smp_021340.3 SmLINC03953-IBu 0.96 7.06e-09 1.81e-06
Smp_021340.3 SmLINC04215-IBu 0.90 3.58e-06 1.00e-04
Smp_021340.3 SmLINC05395-IBu 0.93 2.99e-07 2.30e-05
Smp_021340.3 SmLINC06048-IBu 0.93 2.66e-07 2.12e-05
Smp_021340.3 SmLINC06700-IBu 0.90 3.00e-06 1.00e-04
Smp_021340.3 SmLINC06779-IBu 0.90 3.48e-06 1.00e-04
Smp_021340.3 SmLINC07012-IBu 0.96 6.93e-09 1.79e-06
Smp_015070.2 Smp_021340.3 0.95 1.54e-08 3.04e-06
Smp_021340.3 Smp_017650.1 0.98 3.95e-11 6.50e-08
Smp_021340.3 Smp_018800.1 0.90 4.32e-06 1.00e-04
Smp_019260.2 Smp_021340.3 0.90 4.17e-06 1.00e-04
Smp_024820.1 Smp_021340.3 0.94 9.44e-08 1.04e-05
Smp_027990.1 Smp_021340.3 0.92 1.06e-06 5.56e-05
Smp_029240.1 Smp_021340.3 0.98 1.10e-10 1.24e-07
Smp_029940.1 Smp_021340.3 0.90 3.64e-06 1.00e-04
Smp_021340.3 Smp_032120.1 0.91 1.89e-06 8.38e-05
Smp_032320.2 Smp_021340.3 0.96 2.57e-09 9.37e-07
Smp_032740.1 Smp_021340.3 0.95 4.07e-08 5.88e-06
Smp_033950.3 Smp_021340.3 0.95 4.09e-08 5.89e-06
Smp_034840.1 Smp_021340.3 0.92 7.37e-07 4.31e-05
Smp_040970.3 Smp_021340.3 0.91 1.72e-06 7.82e-05
Smp_049600.3 Smp_021340.3 0.91 1.52e-06 7.19e-05
Smp_052290.1 Smp_021340.3 0.92 6.66e-07 4.01e-05
Smp_021340.3 Smp_059340.3 0.92 8.11e-07 4.60e-05
Smp_062070.1 Smp_021340.3 0.93 4.80e-07 3.19e-05
Smp_062610.2 Smp_021340.3 0.92 1.15e-06 5.91e-05
Smp_021340.3 Smp_064590.3 0.91 2.45e-06 1.00e-04
Smp_079260.1 Smp_021340.3 0.94 9.56e-08 1.04e-05
Smp_021340.3 Smp_083380.2 0.95 2.44e-08 4.15e-06
Smp_021340.3 Smp_084940.2 0.96 8.15e-09 1.99e-06
Smp_091190.1 Smp_021340.3 0.92 7.82e-07 4.49e-05
Smp_098370.1 Smp_021340.3 0.97 3.48e-10 2.59e-07
Smp_099160.4 Smp_021340.3 0.98 4.61e-11 7.15e-08
Smp_099560.1 Smp_021340.3 0.91 1.47e-06 7.02e-05
Smp_100130.2 Smp_021340.3 0.90 3.34e-06 1.00e-04
Smp_103540.1 Smp_021340.3 0.95 2.56e-08 4.28e-06
Smp_103930.1 Smp_021340.3 0.92 5.17e-07 3.36e-05
Smp_105710.2 Smp_021340.3 0.94 1.49e-07 1.42e-05
Smp_126560.1 Smp_021340.3 0.92 1.03e-06 5.48e-05
Smp_136120.1 Smp_021340.3 0.93 4.51e-07 3.06e-05
Smp_138140.1 Smp_021340.3 0.91 1.93e-06 8.50e-05
Smp_140130.1 Smp_021340.3 0.96 7.18e-09 1.83e-06
Smp_141630.4 Smp_021340.3 0.96 1.22e-08 2.61e-06
Smp_143180.1 Smp_021340.3 0.92 5.64e-07 3.57e-05
Smp_021340.3 Smp_144120.1 0.92 7.81e-07 4.48e-05
Smp_145950.1 Smp_021340.3 0.90 4.72e-06 1.00e-04
Smp_021340.3 Smp_146920.1 0.93 5.00e-07 3.28e-05
Smp_152170.1 Smp_021340.3 0.93 3.20e-07 2.41e-05
Smp_153210.1 Smp_021340.3 0.94 1.01e-07 1.09e-05
Smp_021340.3 Smp_154170.1 0.90 2.81e-06 1.00e-04
Smp_155170.1 Smp_021340.3 0.96 6.95e-09 1.79e-06
Smp_157270.1 Smp_021340.3 0.94 1.53e-07 1.45e-05
Smp_157280.1 Smp_021340.3 0.95 4.82e-08 6.59e-06
Smp_157840.1 Smp_021340.3 0.92 6.14e-07 3.79e-05
Smp_021340.3 Smp_159070.4 0.93 3.38e-07 2.50e-05
Smp_159150.1 Smp_021340.3 0.94 1.47e-07 1.41e-05
Smp_169500.1 Smp_021340.3 0.93 5.15e-07 3.35e-05
Smp_171420.1 Smp_021340.3 0.95 2.08e-08 3.73e-06
Smp_174170.1 Smp_021340.3 0.94 1.88e-07 1.67e-05
Smp_174750.1 Smp_021340.3 0.91 1.26e-06 6.29e-05
Smp_175290.1 Smp_021340.3 0.90 4.63e-06 1.00e-04
Smp_175300.1 Smp_021340.3 0.90 3.12e-06 1.00e-04
Smp_180630.1 Smp_021340.3 0.95 3.90e-08 5.71e-06
Smp_190370.1 Smp_021340.3 0.91 1.48e-06 7.04e-05
Smp_194670.1 Smp_021340.3 0.91 1.37e-06 6.68e-05
Smp_196410.1 Smp_021340.3 0.92 7.63e-07 4.41e-05
Smp_021340.3 Smp_200810.1 0.90 4.03e-06 1.00e-04