Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_021330.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
Smp_021330.1 0 0.03 -9.72 -5.60 -5.99

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_021330.1 SmLINC00037-IBu 0.85 4.52e-05 7.00e-04
Smp_021330.1 SmLINC00133-IBu 0.85 4.43e-05 7.00e-04
Smp_021330.1 SmLINC00282-IBu 0.88 1.12e-05 2.00e-04
Smp_021330.1 SmLINC00784-IBu 0.83 1.00e-04 1.50e-03
Smp_021330.1 SmLINC01462-IBu 0.80 3.00e-04 3.40e-03
Smp_021330.1 SmLINC01637-IBu 0.82 1.00e-04 2.00e-03
Smp_021330.1 SmLINC02038-IBu 0.85 5.21e-05 8.00e-04
Smp_021330.1 SmLINC03056-IBu 0.83 1.00e-04 1.40e-03
Smp_021330.1 SmLINC03769-IBu 0.88 1.48e-05 3.00e-04
Smp_021330.1 SmLINC03848-IBu 0.92 5.88e-07 3.52e-05
Smp_021330.1 SmLINC03930-IBu 0.84 6.49e-05 1.00e-03
Smp_021330.1 SmLINC04366-IBu 0.82 1.00e-04 1.80e-03
Smp_021330.1 SmLINC05284-IBu 0.83 1.00e-04 1.40e-03
Smp_021330.1 SmLINC05716-IBu 0.81 2.00e-04 2.70e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_009320.1 0 -0.45 -10.12 -7.98 -10.12
Smp_021330.1 0 0.03 -9.72 -5.60 -5.99
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009320.1 Smp_021330.1 0.92 1.08e-06 5.63e-05
Smp_021330.1 Smp_032320.1 0.91 1.23e-06 6.17e-05
Smp_112090.1 Smp_021330.1 0.96 1.16e-08 2.53e-06