Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_020540.1 Data

Correlation between Smp_020540.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_020540.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_020540.1 0 -4.72 0.81 -4.72 4.67

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020540.1 SmLINC02783-IBu 0.80 3.00e-04 3.20e-03
Smp_020540.1 SmLINC04235-IBu 0.80 2.00e-04 2.80e-03
Smp_020540.1 SmLINC04627-IBu 0.87 1.59e-05 3.00e-04
Smp_020540.1 SmLINC06239-IBu 0.85 5.30e-05 8.00e-04

Correlation between Smp_020540.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_000410.1 0 0.05 -0.39 7.44 13.38
Smp_000420.1 0 0.46 -1.29 3.81 10.40
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_020540.1 0 -4.72 0.81 -4.72 4.67
Smp_033250.1 0 1.88 1.47 7.41 14.66
Smp_058160.1 0 6.89 3.04 6.00 10.33
Smp_077920.1 0 4.92 0.00 5.39 11.83
Smp_131110.2 0 0.00 2.23 5.86 12.58
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_155310.1 0 0.00 0.00 6.53 13.34
Smp_155310.2 0 0.00 0.00 4.10 11.17
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_191910.1 0 -4.11 -4.11 6.38 13.11

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_020540.1 0.94 1.06e-07 1.13e-05
Smp_020540.1 Smp_000410.1 0.95 4.48e-08 6.27e-06
Smp_020540.1 Smp_000420.1 0.94 1.74e-07 1.58e-05
Smp_004420.3 Smp_020540.1 0.90 3.31e-06 1.00e-04
Smp_020540.1 Smp_033250.1 0.94 7.17e-08 8.62e-06
Smp_020540.1 Smp_058160.1 0.90 2.56e-06 1.00e-04
Smp_020540.1 Smp_077920.1 0.96 1.21e-08 2.59e-06
Smp_020540.1 Smp_131110.2 0.90 3.65e-06 1.00e-04
Smp_020540.1 Smp_144440.1 0.96 1.27e-08 2.68e-06
Smp_020540.1 Smp_155310.1 0.95 5.70e-08 7.38e-06
Smp_155310.2 Smp_020540.1 0.93 3.28e-07 2.45e-05
Smp_175560.1 Smp_020540.1 0.95 4.53e-08 6.31e-06
Smp_020540.1 Smp_191910.1 0.95 2.48e-08 4.20e-06